{"id":"W2030755048","doi":"10.1007/s00122-014-2375-y","title":"Gene-based SNP discovery and genetic mapping in pea","year":2014,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Genetic and Environmental Crop Studies","field":"Agricultural and Biological Sciences","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; University of Saskatchewan","funders":"Saskatchewan Pulse Growers","keywords":"Biology; Synteny; Sativum; Single-nucleotide polymorphism; Genetics; SNP genotyping; Field pea; Molecular breeding; Medicago truncatula; Germplasm; Genomics; Genome; SNP; Reference genome; Gene; Botany; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001080357,0.0001577502,0.0001811012,0.00000958679,0.0001174944,0.00005055064,0.00008991425,0.00007082352,0.0000536665],"category_scores_gemma":[0.000007543144,0.00006847685,0.00002363979,0.00007896083,0.0005895843,0.00001035028,0.0001394513,0.00007973418,0.00000902244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006441025,"about_ca_system_score_gemma":0.000001535785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006210584,"about_ca_topic_score_gemma":0.00001411596,"domain_scores_codex":[0.9990908,0.00003764846,0.0001700278,0.0003095862,0.0001201337,0.0002717844],"domain_scores_gemma":[0.9996908,0.0001289638,0.00002609957,0.00005348943,0.000003964639,0.00009666786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007337739,0.0001613812,0.1192611,0.00004478698,0.0000163486,0.000004749673,0.0002407222,0.0002468166,0.4533146,0.04525819,0.00003292981,0.381345],"study_design_scores_gemma":[0.0003794174,0.0001728707,0.9464265,0.00001309644,0.00001619038,0.000005781458,0.0002625372,0.001120305,0.01220843,0.03799363,0.001098066,0.0003031765],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966796,0.0004885955,0.000372669,0.000582347,0.00001917799,0.0001370443,0.000007129623,0.00001512917,0.001698291],"genre_scores_gemma":[0.9973124,0.0003313776,0.001754857,0.0004574172,0.00009618078,0.0000160933,0.00000765104,0.000001850783,0.00002219285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8271654,"threshold_uncertainty_score":0.2792405,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009286736121698905,"score_gpt":0.1757012350080828,"score_spread":0.1664144988863839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}