{"id":"W2030755048","doi":"10.1007/s00122-014-2375-y","title":"Gene-based SNP discovery and genetic mapping in pea","year":2014,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Genetic and Environmental Crop Studies","field":"Agricultural and Biological Sciences","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; University of Saskatchewan","funders":"Saskatchewan Pulse Growers","keywords":"Biology; Synteny; Sativum; Single-nucleotide polymorphism; Genetics; SNP genotyping; Field pea; Molecular breeding; Medicago truncatula; Germplasm; Genomics; Genome; SNP; Reference genome; Gene; Botany; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004473269,0.0002836813,0.0004174451,0.0005891872,0.0003272469,0.0005093106,0.0004708213,0.0004108676,0.0008252143],"category_scores_gemma":[0.0005634559,0.0002071625,0.0005606426,0.0007997642,0.0002333197,0.0002082471,0.0005953058,0.0005356368,0.0005283142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003309746,"about_ca_system_score_gemma":0.0003754193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001196349,"about_ca_topic_score_gemma":0.003278943,"domain_scores_codex":[0.9996112,0.00002743878,0.00002349346,0.0002013505,0.0001045091,0.00003201012],"domain_scores_gemma":[0.9997985,0.00006890912,0.0000451488,0.00002510238,0.00003961528,0.00002278929],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001937182,0.00004152589,0.009618186,0.0002081667,0.00007190141,0.0003339578,0.0001954403,0.001170506,0.9586357,0.0005478637,0.0002716793,0.02871135],"study_design_scores_gemma":[0.0001409412,0.0009502274,0.3158475,0.00009341363,0.0004690315,0.002242951,0.0002605293,0.02488644,0.6274278,0.002505919,0.0250896,0.00008574005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8870733,0.00173188,0.09611236,0.0001643577,0.0000527393,0.0002140414,0.01023922,0.0008870016,0.003524983],"genre_scores_gemma":[0.8501294,0.000901499,0.1276183,0.0002595183,0.00002417898,0.0002371719,0.01703485,0.0001325692,0.003662544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001196349,"threshold_uncertainty_score":0.002760649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009286736121698905,"score_gpt":0.1757012350080828,"score_spread":0.1664144988863839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}