{"id":"W2030768253","doi":"10.1016/j.bbamem.2007.07.020","title":"Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis","year":2007,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Proteome; Periplasmic space; Biology; Escherichia coli; Bacterial outer membrane; Computational biology; Cell envelope; Membrane protein; In silico; Genome; Function (biology); Proteomics; Biochemistry; Gene; Cell biology; Membrane","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001087497,0.001137592,0.001807971,0.001867529,0.0003081432,0.001494745,0.001314999,0.001458786,0.001600725],"category_scores_gemma":[0.001162955,0.0004019683,0.0003629807,0.002666072,0.0007982765,0.002472618,0.000790431,0.001858854,0.002268187],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007973767,"about_ca_system_score_gemma":0.001172471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001168326,"about_ca_topic_score_gemma":0.001736977,"domain_scores_codex":[0.9997558,0.00002556068,0.00002541096,0.00005080033,0.0001253361,0.0000171],"domain_scores_gemma":[0.9994678,0.0002438892,0.00006072516,0.00001956324,0.0001678597,0.00004010741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001053001,0.00005137503,0.0001517973,0.007661109,0.00004978114,0.0002387993,0.00003711449,0.0003653135,0.009889145,0.003762436,0.02177908,0.9559088],"study_design_scores_gemma":[0.00002408934,0.00009156926,0.000999358,0.001586345,0.00008574189,0.00151587,0.00007352563,0.0002116136,0.004460633,0.002889143,0.9880248,0.00003734543],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002231679,0.9978338,0.0005530556,0.0003081453,0.0002867791,0.000003706758,0.00002644881,0.00001061364,0.0007542383],"genre_scores_gemma":[0.0006457284,0.9973274,0.0007723365,0.0002148771,0.0002093469,0.000006326795,0.00005595096,0.000002975014,0.0007651026],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001867529,"threshold_uncertainty_score":0.005785406,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05521231338276137,"score_gpt":0.3009265382183724,"score_spread":0.245714224835611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}