{"id":"W2031095666","doi":"10.1021/pr049882h","title":"Open Source System for Analyzing, Validating, and Storing Protein Identification Data","year":2004,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":692,"is_retracted":false,"has_abstract":true,"ca_institutions":"Research Manitoba","funders":"","keywords":"Server; Computer science; Identification (biology); Database; Database server; Open source; Relational database; Interface (matter); Proteome; World Wide Web; Operating system; Bioinformatics; Software","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.004997016,0.001796952,0.001533107,0.004033466,0.001998703,0.002793799,0.006041268,0.001708606,0.01733657],"category_scores_gemma":[0.007418598,0.0009307243,0.001038323,0.003292422,0.0008474306,0.004325725,0.005896972,0.002512067,0.01976117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001311042,"about_ca_system_score_gemma":0.003688506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001949734,"about_ca_topic_score_gemma":0.001578288,"domain_scores_codex":[0.9960858,0.0004438967,0.0004789786,0.0008553962,0.00177607,0.0003598716],"domain_scores_gemma":[0.9919947,0.0009657892,0.0006853407,0.002891266,0.002442078,0.001020806],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003289937,0.001316783,0.007828506,0.001527451,0.0004366246,0.001072923,0.0007709334,0.003762805,0.1168996,0.01913221,0.3117887,0.5321735],"study_design_scores_gemma":[0.0007933258,0.001014504,0.01984973,0.0005009837,0.0004243274,0.003191251,0.0003238313,0.06097907,0.1728566,0.02048972,0.7189019,0.0006747518],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01404146,0.0008721579,0.6842791,0.0004029674,0.0004793181,0.001425982,0.02248435,0.2673914,0.008623192],"genre_scores_gemma":[0.08047722,0.0009493128,0.6645358,0.0007687322,0.0003381872,0.003484278,0.2011285,0.01707813,0.03123987],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.9939587,"threshold_uncertainty_score":0.05799663,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1731126030223852,"score_gpt":0.457940666299246,"score_spread":0.2848280632768608,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}