{"id":"W2032549914","doi":"10.1128/aem.02120-12","title":"Genomic and Transcriptomic Studies of an RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)-Degrading Actinobacterium","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"McGill University","keywords":"Transcriptome; Strain (injury); Biology; Genome; Actinobacteria; Whole genome sequencing; Microbiology; Genetics; Computational biology; Bacteria; Gene; 16S ribosomal RNA; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001460828,0.0003828827,0.0003467317,0.0004054074,0.0002226551,0.0002804502,0.0001877767,0.0003141575,0.0003711618],"category_scores_gemma":[0.0002954781,0.000147312,0.0003821806,0.0005195366,0.0002583141,0.0001921553,0.0003199339,0.0003699324,0.0002842877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002165189,"about_ca_system_score_gemma":0.0003744308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002423164,"about_ca_topic_score_gemma":0.002874509,"domain_scores_codex":[0.9998323,0.00001756319,0.00001134352,0.00006419842,0.00003952141,0.000035032],"domain_scores_gemma":[0.9997833,0.00004709095,0.00005430763,0.00002455836,0.00004996549,0.00004070581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005354292,0.00001466681,0.0009575039,0.00002548374,0.000003118245,0.00005544734,0.0000373005,0.00005404191,0.997921,0.00002353778,0.000006361347,0.0008480147],"study_design_scores_gemma":[0.00002854908,0.001018949,0.3036381,0.00003573243,0.0001249321,0.001574719,0.0009223319,0.002810154,0.6860533,0.0003466982,0.003413384,0.00003306242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923815,0.0003436442,0.00313098,0.00007396164,0.000009514807,0.00004792147,0.003282245,0.00004752855,0.0006826605],"genre_scores_gemma":[0.9754426,0.0007837242,0.01104174,0.0001253339,0.00001469104,0.0001014052,0.009854678,0.00003550408,0.002600354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002423164,"threshold_uncertainty_score":0.004818141,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01019394582357782,"score_gpt":0.2165794662327561,"score_spread":0.2063855204091782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}