{"id":"W2032549914","doi":"10.1128/aem.02120-12","title":"Genomic and Transcriptomic Studies of an RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)-Degrading Actinobacterium","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"McGill University","keywords":"Transcriptome; Strain (injury); Biology; Genome; Actinobacteria; Whole genome sequencing; Microbiology; Genetics; Computational biology; Bacteria; Gene; 16S ribosomal RNA; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001168433,0.0002408373,0.0002729582,0.00002110575,0.00007850159,0.000006239878,0.0001087901,0.000227442,0.00001579094],"category_scores_gemma":[0.00000472143,0.000224905,0.00004737699,0.00001960388,0.0003984604,0.000007259456,0.0001487892,0.00009991529,0.000002724018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001767615,"about_ca_system_score_gemma":0.000006373677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000015925,"about_ca_topic_score_gemma":4.776513e-7,"domain_scores_codex":[0.999014,0.00002677182,0.0002354856,0.0003676747,0.00002731199,0.000328768],"domain_scores_gemma":[0.9995446,0.00001602503,0.0001004619,0.0002143147,0.000003138308,0.0001214985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001309626,0.00009527631,0.008506051,0.00005318151,0.0001198987,5.075958e-7,0.0001569786,5.159762e-7,0.9902783,0.000005221867,0.00003176374,0.0006213518],"study_design_scores_gemma":[0.0008014423,0.0001168765,0.008120478,0.00000574775,0.00005295325,0.0001627971,0.0008226255,9.481789e-7,0.9868284,0.00001044736,0.002833031,0.0002442329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954516,0.0040708,0.000007879855,0.00001809989,0.0000835141,0.0001123111,0.0001330725,0.000008363832,0.0001143519],"genre_scores_gemma":[0.9975227,0.001289772,0.0002911873,0.0001225845,0.0002278326,0.00001527132,0.000441764,0.00002129205,0.00006766865],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003449869,"threshold_uncertainty_score":0.917136,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01019394582357782,"score_gpt":0.2165794662327561,"score_spread":0.2063855204091782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}