{"id":"W2032638170","doi":"10.1128/mbio.01074-14","title":"Global Population Structure and Evolution of Bordetella pertussis and Their Relationship with Vaccination","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":315,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Medical Research Council; National Institute of General Medical Sciences; Chinese University of Hong Kong; Wellcome Trust; University of Hong Kong; Rijksinstituut voor Volksgezondheid en Milieu; National Health and Medical Research Council","keywords":"Bordetella pertussis; Biology; Comparative genomics; Host adaptation; Pertussis toxin; Vaccination; Virulence; Whooping cough; Gene; Pathogen; Immunity; Population; Virology; Microbiology; Genetics; Genome; Genomics; Immune system; Bacteria; Medicine; G protein","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000689742,0.0002181909,0.0003531198,0.001664095,0.0002729592,0.0006262957,0.0003015849,0.000476041,0.001285688],"category_scores_gemma":[0.001813806,0.0002167473,0.0004274279,0.001677639,0.0005514038,0.0006024052,0.0004697109,0.0004247876,0.0002489803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004805876,"about_ca_system_score_gemma":0.0001622367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00312774,"about_ca_topic_score_gemma":0.002506372,"domain_scores_codex":[0.9996923,0.00007171236,0.00001559654,0.0001265004,0.00002869908,0.00006521282],"domain_scores_gemma":[0.9992085,0.0002199409,0.0002214126,0.0001033788,0.0001215305,0.0001253151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002456907,0.00003457389,0.9679074,0.00003542455,0.0003405617,0.0001758924,0.0007827539,0.003599554,0.0150629,0.0007172419,0.0001976739,0.01090035],"study_design_scores_gemma":[0.000003430007,0.00003665376,0.9975584,0.000004206109,0.0000242516,0.00007931511,0.0001731952,0.001653429,0.00009268756,0.0001753123,0.0001929013,0.000006297808],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988269,0.0002471455,0.0002189101,0.00004789645,0.000001918549,0.000002457796,0.0001493705,0.000006328203,0.0004990556],"genre_scores_gemma":[0.9992643,0.0001692814,0.0001465377,0.00001193216,0.000005130168,0.000003843968,0.0003268163,0.000004559282,0.00006753935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00312774,"threshold_uncertainty_score":0.006219089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005439137704587907,"score_gpt":0.2089743847504663,"score_spread":0.2035352470458784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}