{"id":"W2032896699","doi":"10.1073/pnas.132178099","title":"Disease surveillance in recombining pathogens: Multilocus genotypes identify sources of human <i>Coccidioides</i> infections","year":2002,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Human Genome Research Institute; Wellcome Trust","keywords":"Genotyping; Coccidioides; Biology; Genotype; Population; DNA profiling; Genetics; Population genetics; Microbiology; DNA; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001615054,0.0001891575,0.0002131768,0.0009641107,0.0001828543,0.0004551736,0.0002308936,0.0002240495,0.0004161522],"category_scores_gemma":[0.004661548,0.00008564482,0.0001161539,0.0006139711,0.0002501271,0.0003040255,0.0002920439,0.000270645,0.0001328228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001449128,"about_ca_system_score_gemma":0.000269474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001691665,"about_ca_topic_score_gemma":0.002992061,"domain_scores_codex":[0.9993844,0.0003668976,0.00003092179,0.00009992755,0.00008469685,0.00003306698],"domain_scores_gemma":[0.9981921,0.0008800872,0.0004802456,0.000144518,0.0001859618,0.0001170542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002061934,0.0001536534,0.727674,0.0001303348,0.00007922491,0.0002044862,0.0004164107,0.004865968,0.05222264,0.001354021,0.0004723403,0.2122207],"study_design_scores_gemma":[0.00006962198,0.0005734192,0.8307604,0.00006051863,0.0001334088,0.002795684,0.0007804274,0.11124,0.04484232,0.004651511,0.00401972,0.00007296459],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9097784,0.0005327848,0.08812309,0.0002546754,0.000009646631,0.000039764,0.0002117748,0.0001405897,0.0009092435],"genre_scores_gemma":[0.9335785,0.0001685942,0.06593987,0.00003317861,0.0000103137,0.00001353235,0.0001108489,0.000008499804,0.0001366885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001691665,"threshold_uncertainty_score":0.008541286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06032279671516565,"score_gpt":0.3288971190517351,"score_spread":0.2685743223365694,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}