{"id":"W2033174994","doi":"10.1073/pnas.1019315108","title":"Obligate biotrophy features unraveled by the genomic analysis of rust fungi","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":763,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency; Natural Resources Canada","funders":"Natural Resources Canada; Office of Science; Joint Genome Institute; Broad Institute; U.S. Department of Energy; Institut National de la Recherche Agronomique; National Science Foundation","keywords":"Obligate; Biology; Rust (programming language); Obligate parasite; Genetics; Computational biology; Computer science; Botany; Host (biology); Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004470503,0.00007570023,0.0001392736,0.00009525277,0.0001384032,0.000006565607,0.0006288785,0.00006667278,0.00001291229],"category_scores_gemma":[0.0001060219,0.00003830158,0.0001154343,0.0008721482,0.0009291092,0.000007409682,0.0001761781,0.00006154083,3.208108e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005003193,"about_ca_system_score_gemma":0.00001944248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002329079,"about_ca_topic_score_gemma":3.31393e-7,"domain_scores_codex":[0.9991566,0.00000507278,0.0001993532,0.0001727461,0.0003618496,0.0001043802],"domain_scores_gemma":[0.9993679,0.00001315633,0.0003166292,0.00001227381,0.0002736233,0.00001643147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002216769,0.00002692458,0.008605525,0.00001129426,0.0003034218,9.609228e-10,0.0001771472,0.00002079822,0.9821469,0.005412264,0.003081069,0.0001925359],"study_design_scores_gemma":[0.00007367696,0.00005844358,0.2199659,0.00000861551,0.0001417168,0.000001051136,0.0002561633,0.0000568064,0.7777502,0.0007960814,0.0008325956,0.00005880993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926583,0.001729934,0.000001163212,0.0004740803,0.00001271591,0.00008983423,0.0000581214,0.000001759591,0.004974068],"genre_scores_gemma":[0.9987218,0.0002986552,0.000413709,0.0001488372,0.00003605396,0.000003730896,7.652151e-7,0.000002509731,0.0003739402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2113603,"threshold_uncertainty_score":0.3423341,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02567387226741588,"score_gpt":0.2654744105090395,"score_spread":0.2398005382416236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}