{"id":"W2033356031","doi":"10.1128/jcm.43.5.2080-2091.2005","title":"Use of the Oxford Multilocus Sequence Typing Protocol and Sequencing of the Flagellin Short Variable Region To Characterize Isolates from a Large Outbreak of Waterborne <i>Campylobacter</i> sp. Strains in Walkerton, Ontario, Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Health and Long Term Care; Ministry of Agriculture, Food and Rural Affairs; Public Health Agency of Canada","funders":"Naval Medical Research Center; Health Canada","keywords":"Flagellin; Multilocus sequence typing; Biology; Outbreak; Typing; Campylobacter; Microbiology; Campylobacter jejuni; Sequence (biology); Genetics; Virology; Bacteria; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005909292,0.0003622107,0.0002846593,0.0008693658,0.001031276,0.0005858718,0.000378779,0.0003124111,0.0003298762],"category_scores_gemma":[0.00142197,0.0003059895,0.0002155919,0.001174767,0.0005742974,0.0002065176,0.0003567862,0.0003132199,0.000163908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002656216,"about_ca_system_score_gemma":0.004995224,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5730418,"about_ca_topic_score_gemma":0.7789598,"domain_scores_codex":[0.9991655,0.0000919939,0.00008845844,0.0001776509,0.000336639,0.0001396776],"domain_scores_gemma":[0.9991781,0.0001440183,0.0001549236,0.00006824642,0.0003264486,0.000128125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005872698,0.0002570441,0.2140041,0.0002184011,0.0000643046,0.0009525295,0.002147911,0.0007957445,0.7548109,0.000200222,0.0003057453,0.0256558],"study_design_scores_gemma":[0.00008091943,0.001030879,0.8675042,0.00004936939,0.0001199844,0.001427103,0.002507261,0.002884672,0.1185133,0.00007340257,0.005760489,0.00004829327],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994821,0.0001773801,0.002617862,0.00004014643,0.00000774554,0.0003787924,0.0006771177,0.00001136777,0.001268673],"genre_scores_gemma":[0.9686573,0.0006291933,0.02467608,0.000106936,0.000005710917,0.000278463,0.003590823,0.00001675811,0.002038784],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4269582,"threshold_uncertainty_score":0.8589453,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08600702493165299,"score_gpt":0.2920464546383521,"score_spread":0.2060394297066991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}