{"id":"W2033604645","doi":"10.1093/oxfordjournals.molbev.a026227","title":"The Evolution of Vertebrate Antigen Receptors: A Phylogenetic Approach","year":2000,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Cancer Institute; Fred Hutchinson Cancer Research Center","keywords":"Biology; T-cell receptor; Antigen; Monophyly; Major histocompatibility complex; Phylogenetic tree; Genetics; Gene; Immune system; T cell; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002807251,0.0001767412,0.0002365929,0.00007401794,0.0003949239,0.000006359106,0.0002127401,0.0004479284,0.0001493263],"category_scores_gemma":[0.00003016848,0.0001277956,0.00008588284,0.0001741851,0.0009563271,0.00003177896,0.00005729921,0.0002248749,0.0001757341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005288984,"about_ca_system_score_gemma":0.00005762216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002425028,"about_ca_topic_score_gemma":0.00001476418,"domain_scores_codex":[0.9984569,0.0004973063,0.0002941958,0.0003393543,0.00002201801,0.0003902203],"domain_scores_gemma":[0.9994719,0.00005069941,0.0001014585,0.0003040153,0.0000541239,0.00001780484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001836375,0.00008694028,0.007721658,0.000007475486,0.0001507671,6.006046e-7,0.00006994138,0.00001633511,0.9714172,0.01159265,0.0002875389,0.008465277],"study_design_scores_gemma":[0.005821004,0.002485398,0.06018175,0.00006479067,0.0003114295,0.0005220949,0.001076385,0.0005924273,0.7877528,0.04039844,0.09960979,0.001183681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9519195,0.04059376,0.004458936,0.0001447247,0.0003828994,0.0002211268,0.000009971284,0.00004206866,0.002226995],"genre_scores_gemma":[0.9973919,0.0008954637,0.000131683,0.00003607408,0.0000202637,0.0000252736,0.00008509263,0.00001080822,0.001403447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1836644,"threshold_uncertainty_score":0.5211353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004836518948227993,"score_gpt":0.2036478490558189,"score_spread":0.1988113301075909,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}