{"id":"W2033626418","doi":"10.1371/journal.pone.0036549","title":"K65R in Subtype C HIV-1 Isolates from Patients Failing on a First-Line Regimen Including d4T or AZT: Comparison of Sanger and UDP Sequencing Data","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Merck Sharp and Dohme; McGill University; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Biology; Virology; Efavirenz; Sanger sequencing; Stavudine; Zidovudine; Reverse transcriptase; Reverse-transcriptase inhibitor; Nevirapine; Lamivudine; Genetics; Human immunodeficiency virus (HIV); Polymerase chain reaction; Viral load; Virus; Mutation; Gene; Viral disease; Hepatitis B virus; Antiretroviral therapy","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006859589,0.0002282495,0.0002766264,0.001078731,0.0002663295,0.000442555,0.0001699623,0.0003903541,0.0005407649],"category_scores_gemma":[0.001532031,0.0001452495,0.0002412523,0.0005523718,0.0002400214,0.0001563323,0.000191613,0.0002329883,0.0001806131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002041776,"about_ca_system_score_gemma":0.0001646373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001902931,"about_ca_topic_score_gemma":0.002344307,"domain_scores_codex":[0.9995931,0.00007660374,0.00005974879,0.0001186291,0.0001022119,0.00004972669],"domain_scores_gemma":[0.999104,0.0003043886,0.0002641421,0.0001024608,0.0001390098,0.00008604283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001090199,0.0001007135,0.6830157,0.0001578895,0.0001491339,0.0009544619,0.001653259,0.0005088465,0.2917063,0.00007626787,0.0001557895,0.02043146],"study_design_scores_gemma":[0.00002617652,0.000680626,0.9519689,0.00003187121,0.0001331522,0.005214165,0.0006686959,0.001920081,0.03811259,0.00005913006,0.001164097,0.00002058881],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991885,0.0002128459,0.000280406,0.00001114698,0.00000261954,0.000006062606,0.0001839819,0.000008261783,0.0001061272],"genre_scores_gemma":[0.9979627,0.0001183653,0.001079724,0.0000300374,0.000004736598,0.000005203385,0.0007094396,0.000005919759,0.00008384954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001902931,"threshold_uncertainty_score":0.003783703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2046382280713387,"score_gpt":0.323719939611972,"score_spread":0.1190817115406334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}