{"id":"W2033700906","doi":"10.1089/aid.2011.0178","title":"Transmission of Two Distinct HIV Type 1 Strains to an Individual That Were Harbored for Many Years by Another","year":2011,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Rijksinstituut voor Volksgezondheid en Milieu; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Transmission (telecommunications); Biology; Virology; Recombination; Strain (injury); Lentivirus; Human immunodeficiency virus (HIV); Genetics; Diversity (politics); Coinfection; Viral evolution; Evolutionary biology; Genome; Viral disease; Gene; Computer science; Telecommunications","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005676961,0.0001418609,0.0002412877,0.0002535151,0.0002843029,0.00003487662,0.0003202058,0.0001189451,0.001680276],"category_scores_gemma":[0.00004475969,0.0001133962,0.00005137203,0.0001236569,0.000476334,0.0001145533,0.00008588794,0.0002495917,0.0001297526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002630024,"about_ca_system_score_gemma":0.00007746461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007012233,"about_ca_topic_score_gemma":0.0001775129,"domain_scores_codex":[0.9984473,0.0002308246,0.0001758891,0.0003545708,0.0001497312,0.0006417002],"domain_scores_gemma":[0.9993199,0.0001050351,0.00003391144,0.000283352,0.0001137122,0.0001440814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002926641,0.002015144,0.3539337,0.0001278039,0.0007579993,0.00003288614,0.005330447,7.297397e-8,0.516679,0.008733751,0.05469864,0.05476392],"study_design_scores_gemma":[0.005953272,0.02287567,0.6683097,0.00009209358,0.00005717268,0.000006942462,0.0009903685,2.78471e-7,0.2134367,0.002144862,0.08576313,0.000369726],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961333,0.0007824375,0.0001792179,0.00003209756,0.00002650266,0.0005845068,0.001101223,0.00002808308,0.001132584],"genre_scores_gemma":[0.9954172,0.00005405891,0.0004398417,0.00002787131,0.00001927952,0.00005809441,0.0004130249,0.00002718035,0.003543398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3143761,"threshold_uncertainty_score":0.9992324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1449851184113991,"score_gpt":0.3753481196200006,"score_spread":0.2303630012086015,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}