{"id":"W2033837033","doi":"10.3791/935","title":"Methylated DNA Immunoprecipitation","year":2009,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Occupational Cancer Research Centre; University of British Columbia","funders":"Michael Smith Health Research BC","keywords":"Methylated DNA immunoprecipitation; Immunoprecipitation; DNA; Molecular biology; DNA methylation; Methylation; Chemistry; Biochemistry; Antibody; Biology; Monoclonal antibody; Gene; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003204872,0.0001045395,0.0001570878,0.00008114924,0.00004426131,0.00002631438,0.000129019,0.0000973506,0.00002944875],"category_scores_gemma":[0.0000870764,0.00009271185,0.0001188824,0.00008105421,0.00001569507,0.000008805834,0.00001612911,0.00006339047,0.000004615433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001990287,"about_ca_system_score_gemma":0.00004232594,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001566985,"about_ca_topic_score_gemma":1.481038e-7,"domain_scores_codex":[0.9990515,0.00009740645,0.0004054039,0.0001085656,0.0002091412,0.0001280325],"domain_scores_gemma":[0.9992501,0.00000811716,0.0003265834,0.0001365318,0.0002060468,0.00007266718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002113722,0.0001296897,0.00009829288,0.000001177193,0.00005120368,0.00000238877,0.0001734882,0.00004055132,0.9937796,0.00005036367,0.0002010576,0.005260821],"study_design_scores_gemma":[0.001254901,0.001095103,0.002603687,0.00001341532,0.00001632915,0.000005848738,0.00008280575,0.00002222722,0.9871108,0.000542091,0.007150152,0.0001026362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864043,0.005899445,0.006284838,0.0000661071,0.0002873307,0.00007235824,9.904855e-7,0.000003910097,0.0009806948],"genre_scores_gemma":[0.99468,0.0004985427,0.004302482,0.0001250302,0.0001981886,0.000001159356,0.00001810633,0.00001075408,0.0001656765],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008275735,"threshold_uncertainty_score":0.3780679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02125077034026259,"score_gpt":0.4191146629216562,"score_spread":0.3978638925813936,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}