{"id":"W2033882896","doi":"10.1371/journal.pgen.1002953","title":"Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice","year":2012,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Precursory Research for Embryonic Science and Technology; Japan Science and Technology Agency; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Transposable element; Gene silencing; DNA methylation; Genetics; Trans-acting siRNA; Epigenetics; Argonaute; Small nucleolar RNA; RNA-Directed DNA Methylation; RNA interference; Piwi-interacting RNA; RNA silencing; Genome; Gene; microRNA; RNA; Non-coding RNA; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007985366,0.0002699286,0.0001422341,0.0001794292,0.000160256,0.0002350183,0.0001420073,0.0001967786,0.0004140841],"category_scores_gemma":[0.000086539,0.0001218235,0.0002234492,0.0000864027,0.000232339,0.0002028043,0.0002379295,0.0002023799,0.0002557613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000246917,"about_ca_system_score_gemma":0.0002012865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006345955,"about_ca_topic_score_gemma":0.0009220028,"domain_scores_codex":[0.9999398,0.000005473344,0.000004895039,0.00002539707,0.00001222779,0.00001218641],"domain_scores_gemma":[0.9999409,0.000008681569,0.0000213506,0.00000512448,0.000006321609,0.00001770027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003121148,0.000004292072,0.0007261733,0.00002728078,0.000002825239,0.00006834191,0.0000228666,0.0000326966,0.9979107,0.0001106921,0.00001143494,0.001051443],"study_design_scores_gemma":[0.00002132209,0.0003201379,0.08506007,0.00001535486,0.00005598662,0.001193324,0.0001978954,0.002821006,0.9049467,0.000552011,0.004790853,0.00002529051],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897883,0.004172518,0.003784342,0.00009685439,0.00002105303,0.00001325417,0.0001879139,0.000132465,0.001803395],"genre_scores_gemma":[0.9955288,0.0006869949,0.002003505,0.00006640029,0.000007886038,0.000008675204,0.0001916525,0.00001486215,0.001491229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006345955,"threshold_uncertainty_score":0.001791477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03401373631346221,"score_gpt":0.2583192266093535,"score_spread":0.2243054902958913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}