{"id":"W2033882896","doi":"10.1371/journal.pgen.1002953","title":"Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice","year":2012,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Precursory Research for Embryonic Science and Technology; Japan Science and Technology Agency; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Transposable element; Gene silencing; DNA methylation; Genetics; Trans-acting siRNA; Epigenetics; Argonaute; Small nucleolar RNA; RNA-Directed DNA Methylation; RNA interference; Piwi-interacting RNA; RNA silencing; Genome; Gene; microRNA; RNA; Non-coding RNA; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002405504,0.00007286882,0.0001285263,0.00001642518,0.00002410107,0.000008686845,0.0002347438,0.00007628016,0.000009948247],"category_scores_gemma":[0.00001975576,0.00002668516,0.00002134996,0.0001520277,0.00007386509,0.00001611236,0.00002879441,0.0001173189,0.000004350155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006348499,"about_ca_system_score_gemma":0.000003969813,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003523617,"about_ca_topic_score_gemma":0.0005474485,"domain_scores_codex":[0.9992019,0.0001955811,0.0001389328,0.0001113278,0.0000924257,0.0002598189],"domain_scores_gemma":[0.9995946,0.0002802412,0.00002663222,0.00004126169,0.00001208203,0.00004512513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005671711,0.00004490673,0.3970164,0.00000394328,0.000005163332,0.000001101617,0.0004510787,2.906391e-7,0.5997324,0.00000507684,5.845365e-7,0.002733378],"study_design_scores_gemma":[0.00006963733,0.0001056356,0.8176668,0.000009684086,0.000007707672,0.000003495248,0.0003095357,0.00002720438,0.181505,0.0001014932,0.0001355751,0.00005821397],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969419,0.002425236,5.484157e-7,0.0002554982,0.00000610955,0.0001686253,0.00003326882,0.00000368309,0.0001651125],"genre_scores_gemma":[0.9995944,0.0002252216,0.00004416371,0.00005222693,0.00004540208,0.000009544921,0.00002486313,6.373612e-7,0.000003540404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4206505,"threshold_uncertainty_score":0.1088189,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03401373631346221,"score_gpt":0.2583192266093535,"score_spread":0.2243054902958913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}