{"id":"W2033915514","doi":"10.1371/journal.pone.0059237","title":"Phylogenetic Analysis Reveals a Cryptic Species Blastomyces gilchristii, sp. nov. within the Human Pathogenic Fungus Blastomyces dermatitidis","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; Public Health Ontario; University of Toronto; Toronto Public Health; Mount Sinai Hospital","funders":"Northwestern University","keywords":"Biology; Blastomyces; Phylogenetic tree; Population; Species complex; Blastomyces dermatitidis; Evolutionary biology; Phylogenetics; Panmixia; Gene flow; Clade; Reproductive isolation; Genetics; Population genetics; Genetic variation; Gene; Blastomycosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002413384,0.0002087117,0.0002507633,0.0005627557,0.0004771643,0.0004326546,0.0001190808,0.0002746895,0.0008206943],"category_scores_gemma":[0.0004135539,0.00009880049,0.0001774375,0.0005260432,0.0002583508,0.0001387303,0.0003289754,0.0003128764,0.000288183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002248769,"about_ca_system_score_gemma":0.0002783442,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001234752,"about_ca_topic_score_gemma":0.001987835,"domain_scores_codex":[0.999795,0.00002665861,0.00001717034,0.00008737956,0.00003671178,0.00003710395],"domain_scores_gemma":[0.9997616,0.00004599299,0.00007948097,0.00002705873,0.00003838273,0.00004741908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007219026,0.0001190143,0.3796123,0.0002232338,0.00009693176,0.001221984,0.0008934858,0.0008353965,0.5757918,0.0004339696,0.0002668876,0.03978307],"study_design_scores_gemma":[0.00002667776,0.0002546689,0.9549559,0.0000449109,0.0001053907,0.007136433,0.0007965079,0.001798532,0.03057024,0.0003046965,0.003990819,0.0000152209],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978839,0.0002412748,0.0009742887,0.00002742793,0.00000477612,0.00001682478,0.0001936355,0.0000128633,0.0006451454],"genre_scores_gemma":[0.9970642,0.00009578498,0.002228582,0.00002292016,0.000004563688,0.000007702578,0.0004245403,0.000003251024,0.0001484404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001234752,"threshold_uncertainty_score":0.002745509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01996890614218397,"score_gpt":0.2106126377613785,"score_spread":0.1906437316191945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}