{"id":"W2034590859","doi":"10.1099/mic.0.073452-0","title":"Quantitative evaluation of the host-colonizing capabilities of the enteric bacterium Pantoea using plant and insect hosts","year":2014,"lang":"en","type":"article","venue":"Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"University of Regina","keywords":"Biology; Pantoea; Host (biology); Housekeeping gene; Pathogenic bacteria; Phylogenetic tree; Insect; Isolation (microbiology); Pantoea agglomerans; Phylogenetics; Microbiology; Bacteria; Human pathogen; Gene; Zoology; Ecology; 16S ribosomal RNA; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005497554,0.00009021282,0.0001936213,0.000006993364,0.0001240897,0.000005955993,0.0001729445,0.00006055934,0.00001842854],"category_scores_gemma":[0.000205768,0.00002626977,0.00005580108,0.00009884904,0.0003250609,0.00002802519,0.0001818796,0.00005508598,5.075052e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002066796,"about_ca_system_score_gemma":0.00001298455,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002662216,"about_ca_topic_score_gemma":0.001187161,"domain_scores_codex":[0.9988404,0.0006228276,0.0001958883,0.0001500237,0.0000537087,0.000137185],"domain_scores_gemma":[0.9993114,0.0003113706,0.0002114436,0.00006167607,0.00009444745,0.000009587792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002095717,0.00001291841,0.02747596,0.000009265118,0.00001735899,2.716608e-8,0.0004589011,9.632815e-7,0.971637,0.00005707765,0.000008889186,0.0003006667],"study_design_scores_gemma":[0.0001306918,0.0001625792,0.8678401,0.0000539603,0.00004785061,0.00003362672,0.0004483879,0.0001068915,0.1305915,0.00005396067,0.000458197,0.0000723136],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986311,0.000210716,5.583557e-7,0.0002321349,0.0002562968,0.0002269985,0.0004015355,0.000004565697,0.00003614677],"genre_scores_gemma":[0.9998417,0.0000140589,0.0000397145,0.00005386194,0.00002264802,0.000005217806,0.00001687516,5.620721e-7,0.000005380905],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8410456,"threshold_uncertainty_score":0.11977,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05711706633731355,"score_gpt":0.2334464900780612,"score_spread":0.1763294237407476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}