{"id":"W2034755997","doi":"10.1128/jb.186.5.1415-1422.2004","title":"VirB1 Orthologs from<i>Brucella suis</i>and pKM101 Complement Defects of the Lytic Transglycosylase Required for Efficient Type IV Secretion from<i>Agrobacterium tumefaciens</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Deutsche Forschungsgemeinschaft; European Commission; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Biology; Agrobacterium tumefaciens; Lytic cycle; Secretion; Agrobacterium; Microbiology; Brucella; Virology; Transformation (genetics); Genetics; Gene; Brucellosis; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001289171,0.0008323419,0.0003324321,0.0005641539,0.0002023576,0.000383867,0.0003814572,0.0003839427,0.001821297],"category_scores_gemma":[0.0001683549,0.0002411447,0.000282175,0.0003001707,0.0003468121,0.0001511559,0.0005504828,0.0007702242,0.0007943322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006008651,"about_ca_system_score_gemma":0.0003816332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001347034,"about_ca_topic_score_gemma":0.002048899,"domain_scores_codex":[0.9998062,0.00002856943,0.00002112616,0.00003120124,0.00007370462,0.00003922884],"domain_scores_gemma":[0.9996644,0.00005976468,0.0001175123,0.00003936395,0.00001698689,0.0001018991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002805991,0.00002182809,0.0001406253,0.00001520633,0.000002336796,0.00004061009,0.00001257328,0.00001943349,0.9991899,0.00005762992,0.00001937637,0.0004522753],"study_design_scores_gemma":[0.00002823779,0.0002729187,0.01307159,0.00001146778,0.00001648908,0.00148743,0.000087253,0.0008391629,0.981364,0.00007640354,0.002732652,0.00001251309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967194,0.0004462977,0.001187106,0.00007059431,0.00001862226,0.00001974661,0.0004123872,0.00009353983,0.001032157],"genre_scores_gemma":[0.9916271,0.0002745783,0.001870337,0.00005035914,0.000009313408,0.0000472105,0.002859055,0.0001049935,0.00315711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001821297,"threshold_uncertainty_score":0.006092906,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01352570835543025,"score_gpt":0.2378462846513875,"score_spread":0.2243205762959573,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}