{"id":"W2034755997","doi":"10.1128/jb.186.5.1415-1422.2004","title":"VirB1 Orthologs from<i>Brucella suis</i>and pKM101 Complement Defects of the Lytic Transglycosylase Required for Efficient Type IV Secretion from<i>Agrobacterium tumefaciens</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Deutsche Forschungsgemeinschaft; European Commission; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Biology; Agrobacterium tumefaciens; Lytic cycle; Secretion; Agrobacterium; Microbiology; Brucella; Virology; Transformation (genetics); Genetics; Gene; Brucellosis; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002758928,0.0001960305,0.0004189829,0.00004647236,0.0001370401,0.00002742668,0.0002863386,0.000125083,0.0006317018],"category_scores_gemma":[0.00006536322,0.0001391478,0.0002267188,0.0001263513,0.0003178412,0.0001243155,0.000127807,0.000220595,0.00002178943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001893533,"about_ca_system_score_gemma":0.00005076191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005148512,"about_ca_topic_score_gemma":0.0002970723,"domain_scores_codex":[0.9985021,0.0001294382,0.0006856692,0.0002571153,0.0001343069,0.0002913223],"domain_scores_gemma":[0.9988081,0.000155006,0.000618017,0.000239007,0.00006270285,0.0001171952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003800573,0.0001387461,0.002096786,0.000009540318,0.00004826987,0.000007654521,0.0005978465,0.0007792984,0.9954786,0.00001785488,0.0001314522,0.0003139156],"study_design_scores_gemma":[0.005004115,0.001931711,0.7931612,0.0002273715,0.0004073938,0.0004645942,0.0002672915,0.0003098402,0.1799148,0.001043243,0.01682118,0.000447289],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962545,0.00006661303,0.001307955,0.0005858348,0.001218195,0.0003172077,0.0001954788,0.000007538851,0.00004664448],"genre_scores_gemma":[0.9977583,0.00005984179,0.001652326,0.0003239629,0.0001084453,0.000004217965,0.00003177933,0.00001742505,0.00004373596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8155638,"threshold_uncertainty_score":0.6916692,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01352570835543025,"score_gpt":0.2378462846513875,"score_spread":0.2243205762959573,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}