{"id":"W2034784585","doi":"10.1128/jb.01066-12","title":"Whole-Genome Shotgun Sequence of Rhodococcus Species Strain JVH1","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Thompson Rivers University","funders":"Génome Québec; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; McGill University","keywords":"Biology; Whole genome sequencing; Rhodococcus; Shotgun; Shotgun sequencing; Strain (injury); Cleave; Genome; Organosulfur compounds; Genetics; Sequence (biology); Computational biology; Organism; Sulfur; Gene; Bacteria; DNA; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004020745,0.00009989662,0.0002380453,0.00006570986,0.00001730981,0.000004615707,0.0001440945,0.0001199516,0.00004795696],"category_scores_gemma":[0.0001035241,0.00008075095,0.0001032551,0.0000560862,0.00008951273,0.000008886052,0.0000355507,0.0001150329,0.00000401005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001135776,"about_ca_system_score_gemma":0.00003970918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000234604,"about_ca_topic_score_gemma":8.336239e-7,"domain_scores_codex":[0.9992526,0.00006355504,0.0003463901,0.00008963626,0.00005496599,0.000192891],"domain_scores_gemma":[0.9993892,0.000004397767,0.0002695065,0.0001510621,0.0001144438,0.00007136949],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005392669,0.00003422188,0.001347917,0.00001682808,0.00005198046,0.000001232125,0.00005426916,0.00005441722,0.9972118,0.00004450848,0.0001486527,0.000980232],"study_design_scores_gemma":[0.0003325978,0.0005388632,0.09243071,0.00001785254,0.00003515954,0.0006556564,0.00005711526,9.985943e-7,0.5697901,0.00001585953,0.3359755,0.0001496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965857,0.001405651,0.0008183858,0.0001491755,0.0008267771,0.00004008296,0.00006765642,0.000002548101,0.0001040528],"genre_scores_gemma":[0.9960619,0.0003634318,0.001589736,0.00004759928,0.001601407,6.49446e-7,0.00003579765,0.000009478543,0.0002900251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4274218,"threshold_uncertainty_score":0.3292928,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02087081880724244,"score_gpt":0.2490697241472582,"score_spread":0.2281989053400157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}