{"id":"W2034872612","doi":"10.1186/1471-2164-15-730","title":"Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Memorial University of Newfoundland","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Battelle; U.S. Department of Energy","keywords":"Rhodobacter sphaeroides; Rhodobacter; Biology; Rhodospirillaceae; DNA microarray; Gene expression; Genetics; Gene; Computational biology; Gene co-expression network; Bacteria; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000404488,0.0004026915,0.0002997572,0.001801807,0.0002661813,0.0003174834,0.000271726,0.0002370996,0.0003693258],"category_scores_gemma":[0.000725203,0.0001199753,0.0006812577,0.001636745,0.0002431825,0.0002682986,0.0003572021,0.0002347116,0.00009408917],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007447958,"about_ca_system_score_gemma":0.0003223105,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003341787,"about_ca_topic_score_gemma":0.002694197,"domain_scores_codex":[0.9997587,0.00004354641,0.00001449457,0.00009831544,0.00005613289,0.00002876708],"domain_scores_gemma":[0.9997079,0.0001096601,0.00008223003,0.00001898877,0.00005428271,0.00002693686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006437866,0.0002220406,0.07135654,0.0006130977,0.000370237,0.0004270832,0.0003829686,0.0972277,0.7739776,0.001162185,0.0002669865,0.05334965],"study_design_scores_gemma":[0.00002088835,0.0003909571,0.2115804,0.00003115072,0.0002381882,0.0004742194,0.0002921551,0.6556277,0.1273341,0.001702931,0.002260044,0.00004735215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9637809,0.0004823474,0.03416036,0.00004451271,0.000005026762,0.00003775674,0.0008656309,0.0001933037,0.0004301806],"genre_scores_gemma":[0.9654268,0.0002819076,0.03181892,0.00001380087,0.000004251111,0.0000926365,0.002084827,0.00001842261,0.0002584313],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003341787,"threshold_uncertainty_score":0.006644666,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01287339121919687,"score_gpt":0.269045297953918,"score_spread":0.2561719067347212,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}