{"id":"W2035182371","doi":"10.1038/ismej.2014.157","title":"Which is more important for classifying microbial communities: who’s there or what they can do?","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Dalhousie University; Howard Hughes Medical Institute; National Institutes of Health; National Science Foundation","keywords":"Biology; Microbial ecology; Computational biology; Ecology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008173805,0.0001850777,0.0002103459,0.0000316532,0.0006872512,0.0002784323,0.0005043413,0.000162761,0.00009765948],"category_scores_gemma":[0.00003437071,0.0001077957,0.0001354392,0.0000450532,0.00007475243,0.00001057748,0.0001053121,0.000373236,0.000003402581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003203742,"about_ca_system_score_gemma":0.0002864221,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009555508,"about_ca_topic_score_gemma":0.002367567,"domain_scores_codex":[0.9988529,0.0001600133,0.0003418509,0.0001407895,0.0001003579,0.0004040887],"domain_scores_gemma":[0.998974,0.00004775823,0.0002449433,0.000439141,0.0001820377,0.0001121021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007486524,0.0001347755,0.002798446,0.0001542761,0.0003619594,0.000003329451,0.01827478,0.00005353683,0.8747649,0.0002700467,0.09428632,0.008148986],"study_design_scores_gemma":[0.0062414,0.002561865,0.006829838,0.0009924665,0.0002888492,0.002834881,0.06017543,0.0007306321,0.08542912,0.002307436,0.8303018,0.001306301],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9846491,0.001032836,0.0005317801,0.01277834,0.0004703662,0.0002471176,0.00005189913,0.000008163069,0.0002304157],"genre_scores_gemma":[0.9885309,0.003545954,0.0003689869,0.005365114,0.001043314,0.000008112417,0.00003594202,0.00004081046,0.001060806],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7893358,"threshold_uncertainty_score":0.528585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02530532093451214,"score_gpt":0.2951784281399717,"score_spread":0.2698731072054596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}