{"id":"W2035522966","doi":"10.1111/j.1574-695x.2011.00911.x","title":"Characterization of Bordetella holmesii isolates from patients with pertussis-like illness in the Netherlands","year":2011,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Bordetella pertussis; Microbiology; Biology; Locus (genetics); Virology; Gene; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003016905,0.0002770521,0.000555878,0.0001686344,0.0001480169,0.00000621701,0.0005940888,0.0009096001,0.003250784],"category_scores_gemma":[0.00009326382,0.0001641373,0.00008147865,0.0002583257,0.000793397,0.00008219713,0.0001268352,0.0005887932,0.0001268062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000217741,"about_ca_system_score_gemma":0.00008147926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001278467,"about_ca_topic_score_gemma":0.0003663743,"domain_scores_codex":[0.9978428,0.0007018332,0.0005829677,0.000395949,0.00001894537,0.0004574708],"domain_scores_gemma":[0.9988903,0.0002632501,0.0002829969,0.000442792,0.00009921387,0.00002148541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008968707,0.0006748227,0.08907195,0.000006081895,0.0003108899,0.000002790732,0.002717006,3.316999e-8,0.9004428,0.0001076997,0.0001688241,0.005600256],"study_design_scores_gemma":[0.005542801,0.001443134,0.8645653,0.00009578405,0.00009586956,0.0001412989,0.0005332099,8.09005e-7,0.08703696,0.0001089531,0.04002025,0.0004156771],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996419,0.0006781687,0.00008837993,0.0002544208,0.001885069,0.0003158898,0.0001408824,0.0000408641,0.0001774003],"genre_scores_gemma":[0.997642,0.0002293856,0.00002162533,0.0003556196,0.00004916813,0.00004882435,0.001543381,0.00002184786,0.00008810191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8134058,"threshold_uncertainty_score":0.9976604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00773537498907919,"score_gpt":0.1992264911765803,"score_spread":0.1914911161875011,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}