{"id":"W2035695386","doi":"10.1186/1471-2148-10-226","title":"Phylogenetic and coalescent analysis of three loci suggest that the Water Rail is divisible into two species, Rallus aquaticus and R. indicus","year":2010,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Burke Museum, University of Washington; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Phylogeography; Coalescent theory; Vicariance; Ecology; Population; Range (aeronautics); Subspecies; Zoology; Evolutionary biology; Phylogenetic tree; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001529999,0.000151653,0.0002139358,0.0001002316,0.0001777677,0.00001308614,0.0001856827,0.0002013655,0.0001889961],"category_scores_gemma":[0.00002474861,0.00009069058,0.00008809756,0.0001207857,0.0006105137,0.000003430216,0.0002933897,0.0001098448,0.000004357443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006362695,"about_ca_system_score_gemma":0.00003700698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002595297,"about_ca_topic_score_gemma":0.002142901,"domain_scores_codex":[0.9990992,0.00008409782,0.0001817149,0.0003382728,0.00009540263,0.0002013299],"domain_scores_gemma":[0.9994214,0.00003062001,0.00008951751,0.0003254447,0.00006618047,0.00006679245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004714336,0.00001925007,0.8082898,0.00001173017,0.0002362933,3.999692e-7,0.0001702973,0.00007934477,0.1898205,0.0003830259,0.0003687847,0.0005734749],"study_design_scores_gemma":[0.0005282903,0.0001187988,0.9682774,0.000001749299,0.0002900484,0.00001464026,0.00009005889,0.0004693831,0.01421067,0.001080077,0.01476217,0.000156692],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960171,0.001397836,0.001676513,0.0003979556,0.0001384105,0.0001591766,0.0001012955,0.000004830005,0.0001068865],"genre_scores_gemma":[0.9977067,0.0001609615,0.001078929,0.000213285,0.00009265755,0.000004938688,0.0004967763,0.000006308334,0.0002394238],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1756098,"threshold_uncertainty_score":0.3698255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01638247024572857,"score_gpt":0.2391716821148323,"score_spread":0.2227892118691037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}