{"id":"W2035781029","doi":"10.1128/jb.186.18.6332-6334.2004","title":"Extensive Genomic Polymorphism within <i>Mycobacterium avium</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Bayer HealthCare","keywords":"Biology; Paratuberculosis; Operon; Mycobacterium avium subspecies paratuberculosis; Mycobacterium; Genetics; Microbiology; Insertion sequence; genomic DNA; Gene; Polymorphism (computer science); Subspecies; Genotype; Genome; Bacteria; Transposable element; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011618,0.0001591882,0.0001609528,0.0003468629,0.000152237,0.0002736121,0.0001486228,0.0002815483,0.000883332],"category_scores_gemma":[0.0004489013,0.0001080903,0.0001949047,0.0002924086,0.0001827539,0.0001158495,0.0001808932,0.0003145963,0.0003287096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001470204,"about_ca_system_score_gemma":0.0001112662,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000923024,"about_ca_topic_score_gemma":0.001391108,"domain_scores_codex":[0.9998129,0.00002654275,0.000009955013,0.00006730873,0.00003906141,0.00004416446],"domain_scores_gemma":[0.999649,0.0001134485,0.0001058239,0.00003566401,0.00004849741,0.00004749779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004640599,0.000008216501,0.002141346,0.00001785264,0.000004390864,0.00003975934,0.00002926278,0.00001993201,0.9963653,0.00003342591,0.0000127624,0.001281259],"study_design_scores_gemma":[0.00002189165,0.0008785835,0.3410576,0.00002791339,0.0000888636,0.002617886,0.0003248286,0.0007336336,0.6473949,0.0004286299,0.006402644,0.00002260021],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965185,0.0004800464,0.001899713,0.0000770289,0.000005779328,0.00001082381,0.0006030658,0.00002662043,0.000378325],"genre_scores_gemma":[0.9947736,0.0001773352,0.00257062,0.00008227235,0.00001465847,0.00001489832,0.002014313,0.0000112114,0.0003412157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000923024,"threshold_uncertainty_score":0.002955079,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01868450550118671,"score_gpt":0.2769431586407822,"score_spread":0.2582586531395955,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}