{"id":"W2035864975","doi":"10.1073/pnas.0905222106","title":"High-resolution profiling and discovery of planarian small RNAs","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"Howard Hughes Medical Institute","keywords":"Planarian; Biology; Flatworm; Piwi-interacting RNA; microRNA; Argonaute; Small RNA; Stem cell; Regeneration (biology); RNA; Cell biology; Computational biology; Deep sequencing; Genetics; RNA interference; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004071519,0.00004595259,0.00007186605,0.00004456479,0.00007193471,0.000005470723,0.0001710662,0.00008814764,3.319211e-7],"category_scores_gemma":[0.0001788396,0.00003180176,0.00002375425,0.0001212295,0.0002647688,0.00001842721,0.0000303023,0.00004960814,4.35584e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004081509,"about_ca_system_score_gemma":0.0000177453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000302334,"about_ca_topic_score_gemma":1.263245e-7,"domain_scores_codex":[0.9994992,0.000004381324,0.000146486,0.0001280072,0.0001477423,0.00007419279],"domain_scores_gemma":[0.9997054,0.00001411593,0.0001950844,0.000004722444,0.00007026295,0.00001036362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004718926,0.00001353132,0.006201135,0.00000951505,0.000006794075,9.496247e-10,0.00001009587,0.0001564803,0.9569991,0.03629874,0.0001265809,0.0001307944],"study_design_scores_gemma":[0.0001142444,0.0001413546,0.1317613,0.00001802935,0.00000604939,0.000004085862,0.00001115514,0.0003341643,0.8488458,0.01868649,0.00004179848,0.00003549663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963235,0.0001509456,0.00002096812,0.002858785,0.000007846823,0.00006997849,0.00001334765,0.000001535365,0.0005531039],"genre_scores_gemma":[0.9987487,0.000033718,0.0008726562,0.0002511814,0.00004725534,8.448056e-7,0.000002008166,9.114448e-7,0.00004276243],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1255602,"threshold_uncertainty_score":0.1296838,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02140182395567131,"score_gpt":0.2648100864718341,"score_spread":0.2434082625161628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}