{"id":"W2035886321","doi":"10.1016/j.ympev.2007.06.006","title":"A molecular phylogeny of the genus Gammarus (Crustacea: Amphipoda) based on mitochondrial and nuclear gene sequences","year":2007,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Invertebrate Taxonomy and Ecology","field":"Agricultural and Biological Sciences","cited_by":219,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council; Chinese Academy of Sciences","keywords":"Paraphyly; Biology; Monophyly; Gammarus; Phylogenetics; Clade; Phylogenetic tree; Amphipoda; Zoology; Evolutionary biology; Genus; Molecular phylogenetics; Nuclear gene; Mitochondrial DNA; Gene; Crustacean; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001793804,0.0001491822,0.0001536178,0.00002242595,0.0002062675,0.00002275116,0.0001522612,0.0001624282,0.00002229317],"category_scores_gemma":[0.00003289448,0.00006824514,0.00009786736,0.0001987887,0.0002326255,0.00001632907,0.00007597385,0.0001037215,0.000002705826],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002767658,"about_ca_system_score_gemma":0.00001485124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001179396,"about_ca_topic_score_gemma":0.0001758547,"domain_scores_codex":[0.9989554,0.00009683565,0.0001971462,0.0002867352,0.0001781398,0.0002857696],"domain_scores_gemma":[0.9996122,0.00004276047,0.0001062748,0.00009900217,0.00005649192,0.00008324751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006667939,0.00004674704,0.003397292,0.000006171104,0.00001616027,0.00001064742,0.00002113864,0.0002867128,0.9878187,0.001540225,0.0000169322,0.006772589],"study_design_scores_gemma":[0.0009268811,0.001581299,0.6219429,0.00003682428,0.0001172271,0.00003505029,0.0002335717,0.009525235,0.3573899,0.002158181,0.005478921,0.0005740257],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980572,0.0005722363,0.0003331996,0.0002547718,0.0001560434,0.0002472517,0.00001848589,0.00001129787,0.0003494744],"genre_scores_gemma":[0.9988811,0.00002916891,0.0005133395,0.000468399,0.00008855283,0.000004908539,0.000006789027,0.000002252836,0.000005501973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6304288,"threshold_uncertainty_score":0.2782956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007527627777676097,"score_gpt":0.1799611430804049,"score_spread":0.1724335153027288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}