{"id":"W2036205039","doi":"10.1042/bj20101548","title":"Autotransporter passenger domain secretion requires a hydrophobic cavity at the extracellular entrance of the β-domain pore","year":2011,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of British Columbia; European Synchrotron Radiation Facility","keywords":"Virulence; Secretion; Bordetella pertussis; Microbiology; Virulence factor; Effector; Mutagenesis; Pathogen; Biology; Protein structure; Biophysics; Whooping cough; Chemistry; Cell biology; Bacteria; Mutant; Biochemistry; Gene; Genetics; Virology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001299775,0.0001416741,0.0002616265,0.00004606102,0.0002672493,0.0003711538,0.0002301046,0.0003470661,0.0007733698],"category_scores_gemma":[0.0001894112,0.0001359872,0.0002506177,0.00005906496,0.0002781651,0.000520121,0.0003195931,0.0005106518,0.0003658384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003033385,"about_ca_system_score_gemma":0.000450686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007026694,"about_ca_topic_score_gemma":0.0008735837,"domain_scores_codex":[0.9999453,0.000008438111,0.000003774829,0.00001331665,0.00001378302,0.00001525819],"domain_scores_gemma":[0.9999106,0.00001383181,0.00002706784,0.000008160529,0.00001250735,0.00002781252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000212478,0.00003054044,0.001927794,0.00007421493,0.00001353958,0.0005898239,0.0001258432,0.0007028593,0.9934135,0.0008077591,0.000107353,0.001994319],"study_design_scores_gemma":[0.0001787312,0.0005537084,0.02975952,0.00004256653,0.00006394486,0.002839105,0.0006962424,0.0146548,0.9401439,0.001242844,0.009773195,0.00005141854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963231,0.0002868768,0.002760593,0.00008399182,0.00001071145,0.000005673734,0.00003708727,0.00006096315,0.0004309656],"genre_scores_gemma":[0.9967279,0.0001864156,0.00219088,0.00003651451,0.00000489378,0.000005127175,0.0001851441,0.000007235043,0.0006558865],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007733698,"threshold_uncertainty_score":0.002587199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01241556157182315,"score_gpt":0.207663466686564,"score_spread":0.1952479051147409,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}