{"id":"W2036225189","doi":"10.1016/j.jmb.2004.06.034","title":"Complete Sequence and Genetic Organization of pDTG1, the 83 Kilobase Naphthalene Degradation Plasmid from Pseudomonas putida strain NCIB 9816-4","year":2004,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":146,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Plasmid; Biology; Operon; Pseudomonas putida; Transposable element; Gene; Insertion sequence; Pseudomonas; Genetics; Molecular biology; Mutant; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025675,0.001247507,0.001040494,0.001560283,0.0008159453,0.0006696781,0.0009952697,0.0007392869,0.002240321],"category_scores_gemma":[0.0006697611,0.0007149452,0.0008876108,0.0018042,0.0006381195,0.0005843683,0.0003979586,0.002010722,0.002741028],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009462445,"about_ca_system_score_gemma":0.001968091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006132233,"about_ca_topic_score_gemma":0.004812214,"domain_scores_codex":[0.9997551,0.000030879,0.00002187274,0.00005891981,0.00007509243,0.00005811488],"domain_scores_gemma":[0.9993604,0.0002046116,0.000101564,0.00008751458,0.000104727,0.0001411637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006973842,0.0002779446,0.0004720815,0.0004120797,0.0000149422,0.0002582502,0.0002020877,0.0006157286,0.9842971,0.001082835,0.0007579143,0.01091174],"study_design_scores_gemma":[0.0004785256,0.001171633,0.04198591,0.0001949201,0.0002512229,0.001185127,0.0003398209,0.003187321,0.8920597,0.001880718,0.05710469,0.000160369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7911409,0.005265152,0.08351284,0.001525054,0.0004483628,0.002711911,0.101675,0.001751688,0.01196922],"genre_scores_gemma":[0.5867906,0.003513515,0.05269454,0.0004023906,0.0001230047,0.001313431,0.3376765,0.0006213037,0.01686488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006132233,"threshold_uncertainty_score":0.01219308,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01235272742176617,"score_gpt":0.2295642108889629,"score_spread":0.2172114834671968,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}