{"id":"W2036316917","doi":"10.1371/journal.pgen.1001145","title":"The Genome of a Pathogenic Rhodococcus: Cooptive Virulence Underpinned by Key Gene Acquisitions","year":2010,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Horserace Betting Levy Board; Dorothy Russell Havemeyer Foundation; Grayson-Jockey Club Research Foundation","keywords":"Biology; Virulence; Pathogenicity island; Genome; Plasmid; Genetics; Gene; Genomic island; Rhodococcus equi; Microbiology; Horizontal gene transfer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005688008,0.0002887562,0.0002099307,0.0001898595,0.0001706282,0.0002402215,0.0001269034,0.0002351412,0.0006460626],"category_scores_gemma":[0.0001540242,0.00009580541,0.0002224331,0.0002675211,0.0001844971,0.0001686761,0.0001816132,0.0002965652,0.0003278755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001732689,"about_ca_system_score_gemma":0.0002060092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001025563,"about_ca_topic_score_gemma":0.001239184,"domain_scores_codex":[0.999915,0.000008752337,0.000004525202,0.00003876024,0.00002164857,0.00001126287],"domain_scores_gemma":[0.9998996,0.0000181296,0.00002739782,0.00001551663,0.00001844894,0.0000208342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008150738,0.000008908455,0.001445736,0.00006567145,0.00000522934,0.00009182012,0.00004209676,0.00009923719,0.9934962,0.00008513639,0.00004635695,0.004532191],"study_design_scores_gemma":[0.00003212331,0.0007525221,0.1833497,0.0000644282,0.0001399052,0.00416076,0.0004923664,0.005194384,0.7824908,0.0009092121,0.02237482,0.00003903019],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9876919,0.001498149,0.006263529,0.0001601101,0.00001449539,0.00002718054,0.002681264,0.0001326664,0.001530801],"genre_scores_gemma":[0.9783857,0.0009194909,0.01083068,0.00009183914,0.00001587258,0.00003685793,0.007835684,0.0000484861,0.001835288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001025563,"threshold_uncertainty_score":0.002161264,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01034004033660459,"score_gpt":0.2488478099536566,"score_spread":0.2385077696170521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}