{"id":"W2036454391","doi":"10.1093/nar/gkm313","title":"RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Retrotransposon; Biology; Genome; Genetics; Mobile genetic elements; Computational biology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009533137,0.002081646,0.00135682,0.003850594,0.0007622623,0.001747123,0.001574695,0.0009471248,0.04386074],"category_scores_gemma":[0.002091532,0.00144702,0.001395328,0.001835291,0.000338497,0.001726914,0.001425354,0.00131494,0.02672798],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004933294,"about_ca_system_score_gemma":0.0006871963,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009980663,"about_ca_topic_score_gemma":0.001580002,"domain_scores_codex":[0.9994599,0.00006410838,0.0000538385,0.0001833872,0.0001840366,0.00005468737],"domain_scores_gemma":[0.9991905,0.0003761139,0.0001639969,0.0001011974,0.0001046909,0.00006342052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00189348,0.0003256501,0.01185345,0.00282605,0.0006144155,0.001257434,0.00082934,0.003611057,0.2499695,0.003929126,0.1878124,0.5350781],"study_design_scores_gemma":[0.0004882232,0.0004910661,0.02965513,0.0003323229,0.0003960379,0.005327257,0.0003497022,0.104394,0.4545361,0.01058829,0.3929032,0.0005386916],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"empirical","genre_scores_codex":[0.0230519,0.001060616,0.3268025,0.0002149008,0.0001179186,0.0004054522,0.03356795,0.6059543,0.008824463],"genre_scores_gemma":[0.06747919,0.001294824,0.7511925,0.0003683137,0.0001129536,0.001257672,0.07965688,0.06144279,0.03719495],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.04386074,"threshold_uncertainty_score":0.1467288,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.046274875801703,"score_gpt":0.3209658907717225,"score_spread":0.2746910149700195,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}