{"id":"W2036454391","doi":"10.1093/nar/gkm313","title":"RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Retrotransposon; Biology; Genome; Genetics; Mobile genetic elements; Computational biology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00110937,0.0001018978,0.0001167097,0.00005156706,0.0007395492,0.00007792849,0.000189951,0.0001745695,0.0001033959],"category_scores_gemma":[0.0001208355,0.00005045068,0.00006997018,0.0006797003,0.0000667974,0.00008738377,0.00002860698,0.0002832846,0.00001067224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005373281,"about_ca_system_score_gemma":0.00002351913,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002037007,"about_ca_topic_score_gemma":0.002068219,"domain_scores_codex":[0.9986003,0.00005799956,0.0001988744,0.0003541017,0.0003531147,0.0004356141],"domain_scores_gemma":[0.9990215,0.0005541358,0.00002923756,0.00006794037,0.0001451758,0.000181981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008093736,0.00002252841,0.006067479,0.00001039117,0.000009772058,7.44376e-7,0.0001300193,0.000003501116,0.885281,0.0008735158,0.00007391258,0.1074463],"study_design_scores_gemma":[0.001352431,0.001821663,0.7661538,0.0001327981,0.00007100697,0.00002256953,0.001236835,0.0062332,0.152834,0.01586746,0.0535977,0.0006765741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944877,0.0001898232,0.001729042,0.002060154,0.00003241895,0.000642188,0.00004375358,0.0000638149,0.0007510874],"genre_scores_gemma":[0.9975757,0.00004304537,0.001620181,0.00004449076,0.0004632359,0.00003716432,0.00005367916,0.000002396108,0.0001601278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7600863,"threshold_uncertainty_score":0.5688089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.046274875801703,"score_gpt":0.3209658907717225,"score_spread":0.2746910149700195,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}