{"id":"W2036691589","doi":"10.1194/jlr.p900008-jlr200","title":"Replication of genetic associations with plasma lipoprotein traits in a multiethnic sample","year":2009,"lang":"en","type":"article","venue":"Journal of Lipid Research","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hamilton Health Sciences; McMaster University; Population Health Research Institute; Western University","funders":"Ontario Genomics Institute; Genome Canada; Heart and Stroke Foundation of Canada; Ontario Genomics; Pfizer","keywords":"Genome-wide association study; Single-nucleotide polymorphism; SNP; Genetics; Biology; Population stratification; Genetic epidemiology; Population; Genetic association; Internal medicine; Bioinformatics; Genotype; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low","status":"direct model label, unvalidated"},{"model":"gpt","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"medium","status":"direct model label, unvalidated"}],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002611634,0.00007350988,0.0002268184,0.0002102175,0.00005518368,0.000008375157,0.0002333257,0.0001566839,0.000009153264],"category_scores_gemma":[0.002990295,0.00005962745,0.0000745585,0.0003372176,0.00006228629,0.000004656637,0.00002716969,0.0002871555,0.000001303125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005786515,"about_ca_system_score_gemma":0.0002687894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000641455,"about_ca_topic_score_gemma":0.0002104654,"domain_scores_codex":[0.9982767,0.0003965009,0.0005508154,0.0001876851,0.0003242281,0.0002640536],"domain_scores_gemma":[0.998469,0.0001795797,0.0003777644,0.0002588652,0.0006416215,0.00007316715],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005463709,0.0008543559,0.3463308,0.00002672695,0.0001657876,0.000006964891,0.0006319377,0.00534122,0.5559457,0.0001234907,0.005316443,0.08471019],"study_design_scores_gemma":[0.0009199731,0.001844667,0.984321,0.00003025232,0.000007874743,0.00002119031,0.0001351019,0.0002459097,0.009923404,0.0005300992,0.001947539,0.00007301677],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959785,0.000289198,0.001729994,0.001521357,0.00002620016,0.0001843477,0.00001141845,0.000001318764,0.0002576438],"genre_scores_gemma":[0.9829863,0.000294353,0.01628022,0.00004233934,0.000244677,0.000007578639,0.0000113804,0.000007846128,0.0001253283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6379902,"threshold_uncertainty_score":0.3579878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05639763320270179,"score_gpt":0.3737521859238621,"score_spread":0.3173545527211603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}