{"id":"W2037088345","doi":"10.3389/fgene.2013.00260","title":"Gene genealogies for genetic association mapping, with application to Crohn's disease","year":2013,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Jewish General Hospital; McGill University; Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Crohn's disease; Genetics; Gene; Biology; Genome-wide association study; Genetic association; Disease; Computational biology; Medicine; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006753835,0.0003331126,0.000754685,0.00406376,0.0009367277,0.001479842,0.001506022,0.001499719,0.004282977],"category_scores_gemma":[0.03803746,0.0004677133,0.001124048,0.003905471,0.00112157,0.001271342,0.001504729,0.001625778,0.0007782858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00124767,"about_ca_system_score_gemma":0.001361171,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01415441,"about_ca_topic_score_gemma":0.01474069,"domain_scores_codex":[0.9981834,0.0009477564,0.0001086085,0.0004593476,0.0002535422,0.000047169],"domain_scores_gemma":[0.9854825,0.01198904,0.0009058407,0.0008807809,0.000515221,0.0002266061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003509393,0.0001641996,0.1211783,0.0006937761,0.0006729778,0.001292999,0.00144233,0.3524881,0.002461445,0.1570415,0.02566957,0.3365438],"study_design_scores_gemma":[0.00006777587,0.00002636115,0.009537693,0.00007659955,0.00004709127,0.0005170181,0.0001549696,0.8120117,0.0003160014,0.1624687,0.01474718,0.0000289278],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.0535376,0.002787523,0.9324818,0.001373934,0.0001051738,0.0001864713,0.004951357,0.002716113,0.001860134],"genre_scores_gemma":[0.4301699,0.00180401,0.5557687,0.0005226535,0.0001903977,0.0005884691,0.007443357,0.0006613431,0.002851089],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01415441,"threshold_uncertainty_score":0.03571808,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004082964781697132,"score_gpt":0.2043723268783775,"score_spread":0.2002893620966804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}