{"id":"W2037088345","doi":"10.3389/fgene.2013.00260","title":"Gene genealogies for genetic association mapping, with application to Crohn's disease","year":2013,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Jewish General Hospital; McGill University; Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Crohn's disease; Genetics; Gene; Biology; Genome-wide association study; Genetic association; Disease; Computational biology; Medicine; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001128899,0.0002039125,0.0001476513,0.000106621,0.00007559745,0.00005348672,0.0002617171,0.0001406432,0.000005845797],"category_scores_gemma":[0.00009598587,0.0002107153,0.00006513159,0.0001259274,0.00003716035,0.000005820218,0.0000740787,0.00005241287,0.00002298588],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001253871,"about_ca_system_score_gemma":0.0001337531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009098198,"about_ca_topic_score_gemma":0.00002777463,"domain_scores_codex":[0.9986191,0.00004664557,0.0002602341,0.0004747476,0.000188348,0.0004108764],"domain_scores_gemma":[0.9989354,0.000006066137,0.0001238971,0.0004914918,0.000214396,0.00022872],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003011843,0.00009034593,0.9016148,0.00007603884,0.00007161679,0.00001635727,0.0001001174,0.01357725,0.02122244,0.000008454695,0.04788616,0.01503522],"study_design_scores_gemma":[0.0007028719,0.00008035675,0.9746669,0.0000085129,0.00003343425,6.72065e-7,0.00007502337,0.003617944,0.003695207,0.0004189626,0.01636814,0.0003319887],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7517414,0.0005824373,0.2455873,0.0001748293,0.0002058328,0.001580523,0.00005488615,0.00002057726,0.00005220711],"genre_scores_gemma":[0.737186,0.0001976934,0.2580743,0.0008072684,0.0003902489,0.002150893,0.0002857232,0.00007472143,0.0008331459],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07305207,"threshold_uncertainty_score":0.8592722,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004082964781697132,"score_gpt":0.2043723268783775,"score_spread":0.2002893620966804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}