{"id":"W2037132173","doi":"10.1186/1471-2164-12-268","title":"Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Nitrogen and Sulfur Effects on Brassica","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; Plant Biotechnology Institute; Agriculture and Agri-Food Canada","funders":"Ontario Ministry of Research and Innovation; Agriculture and Agri-Food Canada; Hospital for Sick Children; Génome Québec; McGill University; Agricultural Research Service; China Scholarship Council; U.S. Department of Agriculture","keywords":"Biology; Proteomics; Sulfur; Metabolic pathway; Biochemistry; Sequence (biology); Computational biology; Genetics; Gene; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004471734,0.0001942645,0.0004470541,0.0002244067,0.00004645396,0.00002008912,0.000301137,0.0001299114,0.000003329153],"category_scores_gemma":[0.0001016015,0.0001629774,0.0000894903,0.0004123092,0.0002181905,0.00001516391,0.0001272219,0.0001198172,2.722856e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001182431,"about_ca_system_score_gemma":0.00008861825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000809425,"about_ca_topic_score_gemma":0.00337446,"domain_scores_codex":[0.9985795,0.0002843745,0.0003948647,0.0003861274,0.0001255059,0.0002295957],"domain_scores_gemma":[0.9991154,0.00008975717,0.0002379691,0.0004376229,0.00006725339,0.0000519688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002714882,0.0001873919,0.04694648,0.00004921304,0.0001424786,0.000005014991,0.003362077,0.0000283247,0.9486707,0.00009960988,0.000002290308,0.0002349654],"study_design_scores_gemma":[0.0007315942,0.000112627,0.1437092,0.00001278219,0.0001201657,0.00000246985,0.001058789,0.0001829689,0.8537004,0.0001979741,0.00002325608,0.000147792],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981434,0.0007407028,0.000265126,0.00001287091,0.0000197041,0.0005148113,0.0001908582,0.000004577863,0.0001079483],"genre_scores_gemma":[0.9985374,0.0002605334,0.0009937015,0.00003622048,0.00001560316,0.00006595335,0.00006061917,0.00001574189,0.00001422151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09676268,"threshold_uncertainty_score":0.6646026,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02570768225022331,"score_gpt":0.249006101117347,"score_spread":0.2232984188671237,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}