{"id":"W2037284329","doi":"10.1016/j.vetimm.2014.04.006","title":"Gene expression profiling and putative biomarkers of calves 3 months after infection with Mycobacterium avium subspecies paratuberculosis","year":2014,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"Alberta Innovates Bio Solutions; Alberta Innovates - Technology Futures","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Gene expression profiling; Paratuberculosis; Microbiology; Gene; Subspecies; Gene expression; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Virology; Genetics; Bacteria; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003143816,0.0002597403,0.0005389972,0.0002715394,0.0001315909,0.00001875318,0.00005791579,0.0002552828,0.00004867661],"category_scores_gemma":[0.0001455623,0.0001984023,0.00005771199,0.0001475818,0.0009343275,0.0002123893,0.0001842782,0.0002716741,0.000006676597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002754502,"about_ca_system_score_gemma":0.00004277996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007016377,"about_ca_topic_score_gemma":0.000001740312,"domain_scores_codex":[0.9983133,0.0004493892,0.0003242467,0.0004238248,0.0001006611,0.0003885919],"domain_scores_gemma":[0.9990982,0.0002112799,0.000138296,0.0003238891,0.0001383172,0.00008996961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006440464,0.00011899,0.2437136,0.0001676827,0.0001503422,0.00012227,0.0004955898,1.930556e-7,0.746931,0.00002455794,0.000005820039,0.001829474],"study_design_scores_gemma":[0.001470772,0.007745517,0.758147,0.0001272676,0.00008954464,0.002398213,0.0001988015,0.00001109694,0.2293675,0.00004253123,0.0002401205,0.000161599],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994401,0.00448286,0.0001396433,0.0001754506,0.0001591963,0.0003815215,0.00002623591,0.00004404628,0.0001900924],"genre_scores_gemma":[0.9937407,0.003456976,0.002370717,0.00007063476,0.00004034632,0.000198461,0.00006257583,0.00002497073,0.00003456729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5175635,"threshold_uncertainty_score":0.809061,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01287342996660406,"score_gpt":0.262631941706321,"score_spread":0.2497585117397169,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}