{"id":"W2037284329","doi":"10.1016/j.vetimm.2014.04.006","title":"Gene expression profiling and putative biomarkers of calves 3 months after infection with Mycobacterium avium subspecies paratuberculosis","year":2014,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"Alberta Innovates Bio Solutions; Alberta Innovates - Technology Futures","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Gene expression profiling; Paratuberculosis; Microbiology; Gene; Subspecies; Gene expression; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Virology; Genetics; Bacteria; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002228095,0.0002358791,0.0005213723,0.0007195203,0.0004005725,0.0008384514,0.0002247206,0.0005804276,0.0007127261],"category_scores_gemma":[0.000382084,0.0001569964,0.0003470879,0.0006194959,0.0003699303,0.0002691048,0.000219405,0.000599072,0.000214762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006481864,"about_ca_system_score_gemma":0.0004711991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00573135,"about_ca_topic_score_gemma":0.01004224,"domain_scores_codex":[0.9996843,0.00002098095,0.0000110105,0.00007266623,0.00006362924,0.0001473901],"domain_scores_gemma":[0.9996816,0.00006871457,0.00006785581,0.000009099793,0.00008660073,0.00008615984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004897225,0.0003003014,0.12392,0.0001158049,0.00008055039,0.00061276,0.0005248454,0.0001205604,0.8644047,0.00007642338,0.0001299868,0.004816771],"study_design_scores_gemma":[0.00001901637,0.001033968,0.9310756,0.00001909343,0.0001211949,0.0003699286,0.001044452,0.0003921238,0.06506965,0.0000766984,0.0007594591,0.00001882984],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982827,0.0005132121,0.0002102497,0.00002325615,0.0000108862,0.000009261471,0.0006754177,0.0000044891,0.0002706299],"genre_scores_gemma":[0.9967787,0.0003995976,0.0002277507,0.00006446361,0.00001136317,0.00002571174,0.00128295,0.000003690827,0.001205713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00573135,"threshold_uncertainty_score":0.01139599,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01287342996660406,"score_gpt":0.262631941706321,"score_spread":0.2497585117397169,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}