{"id":"W2037409969","doi":"10.1126/science.1198545","title":"Rapid Pneumococcal Evolution in Response to Clinical Interventions","year":2011,"lang":"en","type":"article","venue":"Science","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":912,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Biology; Lineage (genetic); Streptococcus pneumoniae; Genetics; Serotype; Population; Microbiology; Insertion sequence; Drug resistance; Virology; Gene; Antibiotics; Transposable element; Genome; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002273342,0.00005392604,0.0001135443,0.0004174893,0.0001135196,0.000009594477,0.0001361009,0.00004219703,0.0001403872],"category_scores_gemma":[0.001346614,0.00004433974,0.00009936107,0.001072333,0.0003938678,0.0001323645,0.00006731565,0.000167196,0.0003489656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001198195,"about_ca_system_score_gemma":0.0003448103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001414763,"about_ca_topic_score_gemma":0.00003571258,"domain_scores_codex":[0.998966,0.0001064612,0.0002886405,0.0002508632,0.0001720639,0.0002160211],"domain_scores_gemma":[0.9993421,0.00004956955,0.00003213446,0.0002555819,0.00008671504,0.0002338578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003957287,0.0007411474,0.6220943,0.00001413146,0.000004817385,0.00004673843,0.0006599993,0.00000233062,0.3685144,0.0005389573,0.00007005232,0.006917316],"study_design_scores_gemma":[0.0003021462,0.0007445001,0.9942879,0.00009092023,0.000007008647,0.000034042,0.0001010213,0.00003038534,0.0006487666,0.0001242367,0.00357706,0.00005197561],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946088,0.00002354074,0.0006137484,0.0009684768,0.0005984187,0.0002168227,0.000001195232,0.00004168126,0.002927328],"genre_scores_gemma":[0.9989658,0.000003913345,0.0002818094,0.0003385808,0.00004585198,0.00001992216,1.519062e-7,0.000003528203,0.000340426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3721936,"threshold_uncertainty_score":0.4485364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1372938170234429,"score_gpt":0.4150225164928371,"score_spread":0.2777286994693942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}