{"id":"W2037436985","doi":"10.1128/jb.187.14.4720-4727.2005","title":"The Genome of <i>Salmonella enterica</i> Serovar Gallinarum: Distinct Insertions/Deletions and Rare Rearrangements","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Fondation pour la Recherche Médicale","keywords":"Biology; Salmonella enterica; Prophage; Serotype; Genome; Salmonella; Genetics; Pathogenicity island; Genomic island; Microbiology; Pathogen; Gene; Virology; Escherichia coli; Bacteria; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005936447,0.0003339823,0.0001604997,0.0003860857,0.0001779849,0.0003595181,0.0001721815,0.0003055633,0.0006000623],"category_scores_gemma":[0.000231882,0.0001580909,0.0003227296,0.0003532786,0.0001945297,0.0001661485,0.0002487599,0.0003373589,0.0003883818],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002324737,"about_ca_system_score_gemma":0.0002241768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002134793,"about_ca_topic_score_gemma":0.001657577,"domain_scores_codex":[0.999923,0.00001009579,0.000004633532,0.0000330941,0.00001545857,0.00001365309],"domain_scores_gemma":[0.9998488,0.000025755,0.0000548038,0.00002097572,0.00002083497,0.00002868972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002029015,0.0000133373,0.003342026,0.0001062106,0.00001404515,0.0001272192,0.0001078095,0.0001402639,0.9913076,0.00008804787,0.00006030948,0.00449027],"study_design_scores_gemma":[0.00004088509,0.000565674,0.5104787,0.00008499335,0.00019438,0.004005312,0.0003943922,0.001236884,0.4565818,0.0003167325,0.02606438,0.00003594084],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917184,0.001228361,0.003327449,0.00008408861,0.00001239852,0.00001963148,0.002186104,0.00009352614,0.001329978],"genre_scores_gemma":[0.9808437,0.0007450533,0.006090298,0.00007936805,0.00001271663,0.00002875856,0.010707,0.00005991661,0.001433161],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002134793,"threshold_uncertainty_score":0.004244745,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01950113333477763,"score_gpt":0.2339600653994208,"score_spread":0.2144589320646432,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}