{"id":"W2037953065","doi":"10.1371/journal.pone.0064135","title":"A Rice Stowaway MITE for Gene Transfer in Yeast","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Transposable element; Biology; Gene; Inverted repeat; Genetics; Genome; Insert (composites); Horizontal gene transfer; Reporter gene; Transposition (logic); Mobile genetic elements; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003609153,0.00005316475,0.00008661543,0.000005498473,0.00004881317,0.00002193115,0.00008137538,0.00003847713,0.0007013531],"category_scores_gemma":[0.00001452073,0.00002060282,0.00003354699,0.0001305951,0.0000101074,0.00004550171,0.000009615219,0.00003308963,0.0001203695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008014294,"about_ca_system_score_gemma":0.000002903012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002394903,"about_ca_topic_score_gemma":0.0005170567,"domain_scores_codex":[0.9995365,0.00001281269,0.00009669349,0.0001269755,0.0000847643,0.0001423001],"domain_scores_gemma":[0.9998325,0.00004948636,0.000008483319,0.00002465625,0.00003963837,0.00004522698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000003943511,0.0004564297,0.002173154,0.000006150482,0.00001194296,1.811522e-7,0.00007344014,6.556867e-7,0.9945909,0.00008162868,0.00003441259,0.002567185],"study_design_scores_gemma":[0.0004680425,0.0003274129,0.8458288,0.00003963314,0.00003756241,0.000001037843,0.00009992833,0.0006458662,0.1487907,0.00205618,0.001475915,0.0002289063],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965333,0.00005571609,0.00001014952,0.002447008,0.00001271475,0.000380793,0.00005796491,0.00001944779,0.0004829146],"genre_scores_gemma":[0.9980277,0.00001509476,0.0007714805,0.0001801567,0.0001411363,0.000161276,0.0000348245,5.095541e-7,0.0006678091],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8458001,"threshold_uncertainty_score":0.7679324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04590826744306188,"score_gpt":0.1919031214572818,"score_spread":0.14599485401422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}