{"id":"W2038017537","doi":"10.1371/journal.pone.0077052","title":"An Upstream YY1 Binding Site on the HIV-1 LTR Contributes to Latent Infection","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Provirus; Biology; Chromatin; Population; Virology; HIV Long Terminal Repeat; Binding site; Transcription factor; Transcription (linguistics); Virus latency; Cell biology; Virus; Genetics; Long terminal repeat; Viral replication; DNA; Gene expression; Medicine; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001979804,0.0002278401,0.0002299549,0.0002152177,0.0002540968,0.000473341,0.0002166126,0.0002539762,0.002933211],"category_scores_gemma":[0.0003015182,0.0001738293,0.0001706642,0.0001040372,0.0002740666,0.000302948,0.0004545239,0.0007497765,0.001021295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002849314,"about_ca_system_score_gemma":0.0002338195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003598805,"about_ca_topic_score_gemma":0.0003250498,"domain_scores_codex":[0.9998648,0.0000185929,0.00001038024,0.00003099921,0.00003985867,0.00003536098],"domain_scores_gemma":[0.9997396,0.00005645549,0.0000632189,0.00002001218,0.00002807738,0.00009260294],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000067623,0.00001070629,0.0007411489,0.00002782671,0.000001299205,0.00004972214,0.00001584247,0.00002318236,0.9974973,0.0001271096,0.00003870231,0.001399433],"study_design_scores_gemma":[0.00002760718,0.0002208087,0.05261458,0.00003435835,0.00002836916,0.00111169,0.00009633612,0.001871383,0.9375998,0.0004763849,0.005899975,0.00001875722],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982558,0.006336696,0.008271805,0.0002093939,0.00006108384,0.00002554677,0.0004188506,0.0001320393,0.001986535],"genre_scores_gemma":[0.9943833,0.001084137,0.002274507,0.00006006682,0.00004916135,0.00001354164,0.0004225671,0.00002756377,0.001685211],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002933211,"threshold_uncertainty_score":0.009812534,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03392679775294045,"score_gpt":0.241625032991563,"score_spread":0.2076982352386226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}