{"id":"W2038119459","doi":"10.1093/nar/gkq234","title":"Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic features","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Transposable element; Gene; Signal recognition particle RNA; Alu element; Sequence (biology); Retrotransposon; Sequence analysis; RNA; Genome; Computational biology; Human genome; Non-coding RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000354347,0.0002764608,0.0002859347,0.001484892,0.0002202306,0.0003629285,0.0001425234,0.0004325313,0.00249999],"category_scores_gemma":[0.001209621,0.0001279971,0.0002885382,0.0006536582,0.0003839118,0.000311597,0.0001951742,0.0003132895,0.0009034507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001094739,"about_ca_system_score_gemma":0.00009933689,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002503409,"about_ca_topic_score_gemma":0.0005605139,"domain_scores_codex":[0.9997295,0.00005879157,0.0000222536,0.00007761952,0.00008293225,0.00002890969],"domain_scores_gemma":[0.9979874,0.0008406889,0.0006559954,0.0001405167,0.0002261387,0.0001492668],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001989121,0.00003047653,0.02341144,0.00008613941,0.00003519509,0.0001436748,0.00006949063,0.0002637865,0.9693057,0.0002422322,0.00003340458,0.006179523],"study_design_scores_gemma":[0.00001963321,0.0008726563,0.587383,0.00003437793,0.0001331531,0.00306522,0.0003630735,0.006024468,0.3975545,0.00187453,0.00263921,0.00003628489],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893855,0.0003581719,0.007599164,0.00002290472,0.000008422143,0.0000242982,0.0003480999,0.0001034644,0.002149947],"genre_scores_gemma":[0.9919722,0.0001360012,0.006591459,0.00002576568,0.00001282272,0.00002034202,0.0006531848,0.00002419982,0.0005641017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00249999,"threshold_uncertainty_score":0.008363307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02781630296640797,"score_gpt":0.2833614865743811,"score_spread":0.2555451836079732,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}