{"id":"W2038186289","doi":"10.1038/nmeth895","title":"A comprehensive library of fluorescent transcriptional reporters for Escherichia coli","year":2006,"lang":"en","type":"article","venue":"Nature Methods","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":813,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Promoter; Operon; Escherichia coli; Biology; Transcription (linguistics); Plasmid; Computational biology; lac operon; Genomic library; Genetics; Gene; Gene expression; Base sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006980231,0.001598437,0.001266589,0.002070069,0.0009180606,0.0008891209,0.0009239849,0.0008361784,0.003248785],"category_scores_gemma":[0.0009377577,0.0009002516,0.001206772,0.002777868,0.0002760755,0.0005838118,0.0007023601,0.001359627,0.002714749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009606238,"about_ca_system_score_gemma":0.001433074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002017379,"about_ca_topic_score_gemma":0.005548964,"domain_scores_codex":[0.9993938,0.00006835099,0.00005732077,0.0001190483,0.0002587648,0.0001027271],"domain_scores_gemma":[0.9996116,0.0001207194,0.00004591978,0.00007241358,0.00007862533,0.00007086156],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000274421,0.00008557454,0.0002857078,0.0003006398,0.0000269941,0.0001504482,0.00004005504,0.0007525882,0.9802427,0.0006442624,0.001520642,0.015676],"study_design_scores_gemma":[0.00007561271,0.0003626948,0.003693535,0.0000852465,0.0001993813,0.001066621,0.00004815697,0.001869926,0.9423231,0.0007243949,0.04948604,0.00006516222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.4869855,0.01317568,0.3445127,0.001380991,0.0002326873,0.001931344,0.1246186,0.01210312,0.01505944],"genre_scores_gemma":[0.4272172,0.01774152,0.2864288,0.001080128,0.0000758096,0.001930436,0.2371092,0.003690165,0.02472678],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.003248785,"threshold_uncertainty_score":0.01086825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01131983190637461,"score_gpt":0.3048933324768018,"score_spread":0.2935735005704272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}