{"id":"W2038540528","doi":"10.1126/science.1058758","title":"Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria","year":2001,"lang":"en","type":"article","venue":"Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":379,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Flagellum; Plasmid; Mutant; Gene; Transcription (linguistics); Biology; Reporter gene; Escherichia coli; Gene expression; Computational biology; Genetics; Phenotype; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000174911,0.00009165477,0.0001495788,0.0001611965,0.00003693957,0.0000240914,0.0003595364,0.0001243643,0.00003988341],"category_scores_gemma":[0.00007442649,0.00008341993,0.00004180411,0.0008364209,0.0002135397,0.000003981436,0.0002701806,0.00004136492,0.00000107268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009420556,"about_ca_system_score_gemma":0.00003809135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006160599,"about_ca_topic_score_gemma":0.00020857,"domain_scores_codex":[0.9990832,0.00002295933,0.0001933233,0.0003644348,0.0001176206,0.0002184402],"domain_scores_gemma":[0.999482,0.000009758322,0.00008109269,0.0003324419,0.00004956583,0.00004515888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001186657,0.00003880901,0.009305683,0.00000140496,0.00001157591,9.057186e-7,0.00003193184,0.00007127233,0.9854901,0.00000131186,0.000007160997,0.005027991],"study_design_scores_gemma":[0.00007247029,0.00009715786,0.03322652,0.00001376466,0.00001450691,7.155961e-7,0.00003560685,0.0002989107,0.9607147,0.000009057961,0.005414684,0.0001018847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985356,0.0005097867,0.0006292911,0.00002660435,0.0001099568,0.00004724687,0.00002546281,0.000005518853,0.0001104911],"genre_scores_gemma":[0.9973817,0.0006315336,0.0018464,0.00002556468,0.00003282044,0.000002918863,0.00002688455,0.00000566295,0.0000465235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02477537,"threshold_uncertainty_score":0.3401766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007010203622438409,"score_gpt":0.2272658447672024,"score_spread":0.220255641144764,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}