{"id":"W2038601384","doi":"10.4236/am.2013.41a038","title":"Simplifying Stochastic Mathematical Models of Biochemical Systems","year":2013,"lang":"en","type":"article","venue":"Applied Mathematics","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Stochastic dynamics; Stochastic modelling; Stochastic process; Computer science; Statistical physics; Biological system; Mathematical model; Mathematics; Physics; Biology; Statistics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001191176,0.001103753,0.001044932,0.001058538,0.0005561837,0.001370902,0.001809071,0.001553138,0.002388794],"category_scores_gemma":[0.005001373,0.0004235449,0.001745153,0.0008569342,0.001223368,0.001661732,0.001512072,0.0020538,0.0006058891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001481055,"about_ca_system_score_gemma":0.0009989147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006053188,"about_ca_topic_score_gemma":0.003826459,"domain_scores_codex":[0.9990801,0.0003203669,0.00004971719,0.0001183282,0.0003486672,0.00008287641],"domain_scores_gemma":[0.9985074,0.0008763415,0.0002158992,0.0001796245,0.0001512028,0.00006946482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00001410791,0.00002603841,0.0002379574,0.00004842869,0.00001903318,0.0001545991,0.000111302,0.5650798,0.002141261,0.4288152,0.000669122,0.002683178],"study_design_scores_gemma":[0.000006436545,0.000007099341,0.00006492106,0.000004346765,0.000005680437,0.00002721819,0.00001024054,0.9175643,0.0001719739,0.08058564,0.001546428,0.000005681472],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.05210222,0.001148852,0.9261255,0.001077234,0.0001592325,0.00007610692,0.0004610071,0.000281494,0.01856829],"genre_scores_gemma":[0.8140334,0.003303471,0.1561905,0.0004204098,0.0005411851,0.0003948516,0.001003768,0.0002703489,0.02384199],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006053188,"threshold_uncertainty_score":0.01203591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0146904184330302,"score_gpt":0.2243176441149615,"score_spread":0.2096272256819313,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}