{"id":"W2038624062","doi":"10.1371/journal.pone.0005761","title":"A Novel Protein Isoform of the Multicopy Human NAIP Gene Derives from Intragenic Alu SINE Promoters","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"RNA regulation and disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Biology; Promoter; Retrotransposon; Genetics; Alu element; Gene; Genome; Human genome; Gene expression; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003563648,0.00009952887,0.0001117827,0.00001642808,0.00005757047,0.00001130134,0.0001625132,0.00007071534,0.000038014],"category_scores_gemma":[0.00005668755,0.00007650214,0.00007207939,0.00005256874,0.000062013,0.000003415907,0.00004235435,0.00004303649,0.000003276382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000838392,"about_ca_system_score_gemma":0.00003598874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001747942,"about_ca_topic_score_gemma":0.00001048781,"domain_scores_codex":[0.9993563,0.00002005826,0.0001642013,0.0001865167,0.0001487007,0.0001242379],"domain_scores_gemma":[0.999499,0.000002314495,0.00008868064,0.0002923682,0.00005550861,0.0000621389],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006147758,0.001024614,0.0005841624,0.00001341507,0.00007914149,3.117761e-7,0.00005255317,0.000007489363,0.9977553,0.00002459836,0.00002460459,0.00037234],"study_design_scores_gemma":[0.0007768631,0.0001503316,0.05787867,0.00004449158,0.00004736288,4.097203e-7,0.00000979525,0.000320012,0.9405295,0.0001070759,0.00003853281,0.00009696217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998221,0.0001656523,0.0003942268,0.0005869886,0.000008843544,0.0004173113,0.00003864173,0.00001054069,0.0001568005],"genre_scores_gemma":[0.9944745,0.000006829128,0.00460664,0.0003033279,0.0001012479,0.00001577512,0.00007663694,0.00001013163,0.0004049265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0572945,"threshold_uncertainty_score":0.3119667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02278681436305136,"score_gpt":0.2273527915904063,"score_spread":0.204565977227355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}