{"id":"W2039034130","doi":"10.1089/aid.2006.0198","title":"A 21-Base Pair Insertion/Duplication at Codon 69 of the HIV Type 1 Reverse Transcriptase in a Patient Undergoing Multiple Nucleoside Therapy","year":2007,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"","keywords":"Didanosine; Stavudine; Reverse transcriptase; Virology; Nucleoside Reverse Transcriptase Inhibitor; Genetics; Biology; Abacavir; Insertion; Gene duplication; Point mutation; Context (archaeology); Stop codon; Virus; Mutation; Gene; Polymerase chain reaction; Viral load; Antiretroviral therapy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007423608,0.0001298922,0.000203725,0.0003201451,0.0002780826,0.00001692852,0.00009083126,0.00007057652,0.0001147525],"category_scores_gemma":[0.0002240955,0.00008806393,0.0000605501,0.0005013416,0.0002297828,0.00008178328,0.00005568824,0.0002310096,0.00002748733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002745126,"about_ca_system_score_gemma":0.000142251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004147124,"about_ca_topic_score_gemma":0.001870917,"domain_scores_codex":[0.9983979,0.000129685,0.0003295485,0.0002719906,0.0005031052,0.0003677653],"domain_scores_gemma":[0.9990035,0.0002805848,0.00006355465,0.0003298933,0.0001780416,0.0001444666],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001457786,0.0006070797,0.9213004,0.00008019868,0.00005558897,0.00004061025,0.002034075,6.5532e-7,0.06808564,0.0003502942,0.003063263,0.002924427],"study_design_scores_gemma":[0.004845823,0.001899695,0.8366612,0.0003573179,0.00001992521,0.000008627451,0.00125888,0.000008763219,0.1376165,0.0002348693,0.01694318,0.0001452993],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974196,0.0005340579,0.000007774986,0.000787028,0.00002293383,0.0007433487,0.00001188307,0.00002230348,0.0004510528],"genre_scores_gemma":[0.9962016,0.0003767825,0.0002782429,0.0001780349,0.00002349043,0.00002990578,0.00003825871,0.00001994663,0.002853741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08463924,"threshold_uncertainty_score":0.3591143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08135282156246067,"score_gpt":0.3423018956125299,"score_spread":0.2609490740500692,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}