{"id":"W2039069911","doi":"10.1111/j.1574-695x.2006.00147.x","title":"A subset of<i>Actinobacillus pleuropneumoniae in vivo</i>induced promoters respond to branched-chain amino acid limitation","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Cooperative State Research, Education, and Extension Service; National Research Council Canada; University of Pittsburgh; Michigan State University; U.S. Department of Agriculture","keywords":"Actinobacillus pleuropneumoniae; Virulence; Biology; Amino acid; Valine; Gene; Branched-chain amino acid; Microbiology; Biosynthesis; Isoleucine; Biochemistry; Genetics; Leucine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001221151,0.0004478608,0.0009299482,0.001006279,0.0002000223,0.00001647368,0.0006913912,0.001348892,0.002120831],"category_scores_gemma":[0.001159372,0.0004222329,0.0002319609,0.0009058173,0.0009940953,0.0001014213,0.0003872669,0.001140957,0.001077933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002127646,"about_ca_system_score_gemma":0.0004503996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002550906,"about_ca_topic_score_gemma":0.001954193,"domain_scores_codex":[0.9950498,0.001436101,0.001185016,0.0009053897,0.00007003081,0.001353691],"domain_scores_gemma":[0.9981417,0.0005872498,0.0002819623,0.0006557399,0.0002173268,0.000116038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008347337,0.0007377113,0.002536762,0.00003480575,0.0001736627,0.00008416118,0.0004310689,0.000005665063,0.9877267,0.0006163835,0.003267597,0.003550726],"study_design_scores_gemma":[0.004628472,0.001335219,0.02123676,0.0001544709,0.00004681899,0.001117316,0.0003044536,0.000003955737,0.9218076,0.0002522925,0.04853622,0.0005764131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993185,0.001876811,0.0001856542,0.001981532,0.0011164,0.0008189959,0.000274981,0.0001128677,0.0004477738],"genre_scores_gemma":[0.9974275,0.0000991013,0.00008014236,0.0005074623,0.00007401939,0.0001174091,0.000551972,0.00004547792,0.001096951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06591912,"threshold_uncertainty_score":0.9999475,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01357531762591708,"score_gpt":0.2612983434613987,"score_spread":0.2477230258354816,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}