{"id":"W2039502062","doi":"10.1371/journal.ppat.1004244","title":"Genetic Analysis of Leishmania donovani Tropism Using a Naturally Attenuated Cutaneous Strain","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research; Fogarty International Center; National Institutes of Health; National Research Council Sri Lanka","keywords":"Cutaneous leishmaniasis; Visceral leishmaniasis; Biology; Leishmania donovani; Tropism; Leishmania; Leishmaniasis; Virology; Pseudogene; Leishmania major; Single-nucleotide polymorphism; Gene; Tissue tropism; Copy-number variation; Genetics; Genotype; Parasite hosting; Genome; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002261875,0.0002519687,0.000145759,0.000389431,0.0001452167,0.0002009519,0.0002299713,0.0001889311,0.00148101],"category_scores_gemma":[0.0002405195,0.0001170684,0.0001624436,0.000190301,0.0003115744,0.0001172029,0.0002137361,0.0005389487,0.0001545444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001972741,"about_ca_system_score_gemma":0.00009660685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005145388,"about_ca_topic_score_gemma":0.0007914851,"domain_scores_codex":[0.9998059,0.00006706805,0.00002340245,0.00004431367,0.0000263295,0.00003310646],"domain_scores_gemma":[0.9996743,0.0001029064,0.0000854144,0.0000458196,0.0000326661,0.00005883897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007649922,0.00006468099,0.0005738632,0.00001578177,0.000004201002,0.00006981214,0.00002409213,0.00002395727,0.9986406,0.00007661706,0.000009160635,0.0004207419],"study_design_scores_gemma":[0.00005357832,0.003591231,0.03130631,0.00002003502,0.00006488382,0.003321745,0.0002750924,0.0009670758,0.9582391,0.0001426692,0.002004135,0.00001415299],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975945,0.0001123668,0.001432005,0.00003903254,0.000005522313,0.00003315436,0.000171909,0.00001764008,0.0005939159],"genre_scores_gemma":[0.9961302,0.000161285,0.0026259,0.00002884742,0.000002492455,0.00002580845,0.0003255915,0.00001596016,0.0006838458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00148101,"threshold_uncertainty_score":0.004954398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03500599231899928,"score_gpt":0.2909938115594676,"score_spread":0.2559878192404683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}