{"id":"W2039533663","doi":"10.5731/pdajpst.2014.01013","title":"Preliminary Evaluation of Next-Generation Sequencing Performance Relative to qPCR and In Vitro Cell Culture Tests for Human Cytomegalovirus","year":2014,"lang":"en","type":"article","venue":"PDA Journal of Pharmaceutical Science and Technology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur; U.S. Food and Drug Administration; Sanofi","keywords":"Human cytomegalovirus; Virology; Cell culture; Polymerase chain reaction; Cytopathic effect; Biology; In vitro; Cytomegalovirus; Population; Real-time polymerase chain reaction; Human cell; In vitro toxicology; Microbiology; Virus; Computational biology; Medicine; Herpesviridae; Gene; Viral disease; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002931633,0.00008563547,0.0002407447,0.0006900012,0.0001452982,0.00002413392,0.0001273756,0.0001007321,0.00000947104],"category_scores_gemma":[0.0008879638,0.00006458766,0.00002164053,0.0008047731,0.0004534625,0.000347517,0.000073283,0.0003544612,9.940848e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002089718,"about_ca_system_score_gemma":0.0002991006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000619709,"about_ca_topic_score_gemma":0.000006058824,"domain_scores_codex":[0.998608,0.00004306963,0.000330778,0.0001933337,0.0005724085,0.0002523998],"domain_scores_gemma":[0.9985921,0.00006927329,0.000122931,0.00008815079,0.0009621778,0.0001653967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002658445,0.00005066425,0.0014821,0.00005062241,0.000005255567,0.000002086213,0.0002306833,0.0000120318,0.8786955,0.0003568383,0.00002141045,0.118827],"study_design_scores_gemma":[0.002177943,0.001772037,0.003070314,0.00008463817,0.00007777489,0.0001120989,0.0001821583,0.03960217,0.9496833,0.0009619879,0.002195493,0.00008007254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967489,0.000779648,0.0002811955,0.001411998,0.00003449786,0.0004141507,0.000001619085,0.000005630133,0.0003223765],"genre_scores_gemma":[0.9968333,0.0001577969,0.002771936,0.0001390532,0.00006382164,0.00001332987,6.647051e-7,0.000005213928,0.00001492053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1187469,"threshold_uncertainty_score":0.2633808,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1514714281417184,"score_gpt":0.4186867944098858,"score_spread":0.2672153662681673,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}