{"id":"W2039789666","doi":"10.1021/pr5012284","title":"Quantification of the Host Response Proteome after Herpes Simplex Virus Type 1 Infection","year":2015,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Children's Hospital Research Institute of Manitoba; University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Biology; Stable isotope labeling by amino acids in cell culture; Herpes simplex virus; Proteome; Virus; Viral replication; Proteomics; Virology; Quantitative proteomics; Gene; Cell biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001619951,0.0003957689,0.0003163096,0.0005886839,0.0002845429,0.0004475251,0.000207441,0.0002471838,0.0007518149],"category_scores_gemma":[0.000136774,0.0001360413,0.0001906515,0.0005449984,0.0001474609,0.0003888338,0.0002347055,0.0004839512,0.0003461376],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002840212,"about_ca_system_score_gemma":0.0002176666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006581722,"about_ca_topic_score_gemma":0.0008268507,"domain_scores_codex":[0.9998893,0.000008769388,0.00000598519,0.00003565235,0.0000359633,0.0000244139],"domain_scores_gemma":[0.9999155,0.000014715,0.00001900707,0.000005593447,0.00002656938,0.00001872864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006566791,0.000007732255,0.0004174236,0.00003801132,0.000006060141,0.00002318747,0.00002202702,0.00001976831,0.9984327,0.00002095173,0.00001979708,0.000926634],"study_design_scores_gemma":[0.00000490687,0.000169362,0.04151783,0.00001325381,0.00003985472,0.000354172,0.0001651623,0.001706288,0.9537467,0.00009358678,0.002174955,0.00001389818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9798535,0.004940149,0.01032146,0.00007784896,0.00006492315,0.00005416272,0.002520031,0.0001766027,0.001991315],"genre_scores_gemma":[0.9665002,0.005402676,0.01787416,0.000185125,0.00004514425,0.0001683224,0.005046304,0.00009915094,0.004678972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007518149,"threshold_uncertainty_score":0.002515078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1879334135612431,"score_gpt":0.4463215346030009,"score_spread":0.2583881210417579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}