{"id":"W2040679179","doi":"10.1038/embor.2011.8","title":"A model for the topology of active ribosomal RNA genes","year":2011,"lang":"en","type":"article","venue":"EMBO Reports","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"European Commission","keywords":"Ribosomal RNA; Gene; Biology; Genetics; 23S ribosomal RNA; RNA; Topology (electrical circuits); Ribosomal protein; Computational biology; 5.8S ribosomal RNA; Chromatin; Ribosome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001850194,0.00008249342,0.0001110986,0.00001288067,0.00005569883,0.000002506963,0.00009920514,0.0001050059,0.00003595118],"category_scores_gemma":[0.00007991401,0.00005736372,0.0001050155,0.00001864721,0.00006053312,0.000001802659,0.00005100099,0.0000242144,6.212642e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000273287,"about_ca_system_score_gemma":0.00005668173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003277286,"about_ca_topic_score_gemma":0.00001978583,"domain_scores_codex":[0.9993845,0.00002035693,0.000205236,0.0001967809,0.00005818273,0.0001349337],"domain_scores_gemma":[0.9993519,0.00001397832,0.0001832425,0.000354772,0.00006878859,0.00002735445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001250966,0.00003713682,0.0001862779,0.000008961471,0.00008023425,0.000008385839,0.0002129576,0.0000363768,0.9827277,0.0007891181,0.0002666755,0.01552108],"study_design_scores_gemma":[0.0000780316,0.0001302004,0.0002545044,0.000003036177,0.00002804448,0.00006479466,0.00006123993,0.0003287061,0.9906726,0.005644478,0.002657702,0.00007661201],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8997006,0.001034402,0.09301556,0.00009507525,0.0003372115,0.0004985791,0.00001539972,0.000009412407,0.005293695],"genre_scores_gemma":[0.9934442,0.00006202423,0.005002372,0.0000741175,0.00009404471,0.0001060968,0.00000813378,0.00001317072,0.001195808],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09374356,"threshold_uncertainty_score":0.2339225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03904855719379529,"score_gpt":0.2627311351329202,"score_spread":0.2236825779391249,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}