{"id":"W2041184037","doi":"10.1186/1471-2105-8-117","title":"Colony size measurement of the yeast gene deletion strains for functional genomics","year":2007,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Metropolitan University; University of Waterloo; Carleton University; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Functional genomics; Yeast; Saccharomyces cerevisiae; DNA microarray; Biology; Computational biology; Genomics; Model organism; Genetics; Gene; Plasmid; Comparative genomics; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006687011,0.00009608736,0.00008466936,0.00002396204,0.00009246718,0.00001307121,0.0001842117,0.0001096861,0.000008784526],"category_scores_gemma":[0.000215757,0.00007224879,0.0001196169,0.00007875984,0.00008312377,0.00000286126,0.00009568152,0.0000577852,0.000004745941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004264535,"about_ca_system_score_gemma":0.0002591711,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002888975,"about_ca_topic_score_gemma":0.00009334481,"domain_scores_codex":[0.9990224,0.00001414341,0.0003092451,0.00009495577,0.0003333614,0.000225887],"domain_scores_gemma":[0.9992167,0.00001779328,0.0001177277,0.0002494433,0.0003373697,0.0000609717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001927057,0.00006442714,0.001794393,0.0001334714,0.00004733161,5.609958e-8,0.00007014495,0.001370789,0.991516,0.0001307397,0.001983433,0.002696523],"study_design_scores_gemma":[0.001056388,0.0003263989,0.03846095,0.00001534041,0.00002798506,0.00001157714,0.0002387686,0.008295489,0.9281822,0.00009507083,0.02311071,0.0001790684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6531399,0.0001722129,0.3442747,0.0000608132,0.0003070203,0.0006140291,0.0001592683,0.000006361022,0.001265719],"genre_scores_gemma":[0.9560382,0.00003485136,0.04305204,0.0001462137,0.0002577045,0.00001933148,0.00007519902,0.00001621244,0.0003602434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3028983,"threshold_uncertainty_score":0.294622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03744480572393726,"score_gpt":0.2591775465108114,"score_spread":0.2217327407868741,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}