{"id":"W2041393279","doi":"10.1186/1742-4690-9-s2-p269","title":"HLA-associated viral polymorphism in chronically HIV-1-infected Japanese cohort: analysis of four-digit HLA allele level","year":2012,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Human leukocyte antigen; Allele; Polymorphism (computer science); HLA-A; Genetics; Immunology; Human immunodeficiency virus (HIV); Allele frequency; Medicine; Biology; Virology; Gene; Antigen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002430122,0.0001727845,0.0002389831,0.0004127289,0.0005360186,0.0003943081,0.0002147065,0.000286327,0.001007104],"category_scores_gemma":[0.0006774208,0.0002395187,0.0002744104,0.0005686388,0.0002330905,0.0002952444,0.000362639,0.0003791006,0.0001959871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001471541,"about_ca_system_score_gemma":0.00019006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007736771,"about_ca_topic_score_gemma":0.006756573,"domain_scores_codex":[0.9998031,0.00002721095,0.00001932441,0.00007758934,0.00003122245,0.000041567],"domain_scores_gemma":[0.9995629,0.000038599,0.000121067,0.00006109144,0.00006111125,0.0001551625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007752243,0.000007721294,0.9984227,0.000002251141,0.00001561172,0.00007465284,0.00009006896,0.00001019443,0.0009008085,0.000007283763,0.00001723714,0.0003738978],"study_design_scores_gemma":[0.000002862746,0.00004755494,0.9992524,0.000001328126,0.00001613771,0.000202936,0.0002295646,0.00009020356,0.00006233856,0.000009299636,0.00008272265,0.000002665552],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998001,0.00003488285,0.00002609012,0.000004342746,9.087642e-7,0.000001414735,0.00005432403,6.024739e-7,0.00007727484],"genre_scores_gemma":[0.9997575,0.00003009526,0.00002895975,0.000007159044,0.000002062615,0.000002152099,0.00009316452,0.000001045067,0.00007794036],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007736771,"threshold_uncertainty_score":0.01538348,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02448910288331151,"score_gpt":0.2642888457358875,"score_spread":0.2397997428525759,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}