{"id":"W2041424522","doi":"10.1097/qad.0b013e3283121c90","title":"Transmission networks of drug resistance acquired in primary/early stage HIV infection","year":2008,"lang":"en","type":"article","venue":"AIDS","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; Institut National de Santé Publique du Québec; Centre Hospitalier de l’Université de Montréal; McGill University; Jewish General Hospital","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Transmission (telecommunications); Reverse transcriptase; Drug resistance; Biology; Virology; Population; Cluster (spacecraft); Genetics; Polymerase chain reaction; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001362241,0.0001148391,0.0002606421,0.0001320203,0.0000462968,0.00000279677,0.00003443543,0.00006377015,0.0000842556],"category_scores_gemma":[0.000008864906,0.00009588134,0.00006397654,0.0003299926,0.00004813043,0.00008980949,0.00001064825,0.00007723816,0.0000144932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000117503,"about_ca_system_score_gemma":0.00008606046,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000471786,"about_ca_topic_score_gemma":0.00001744871,"domain_scores_codex":[0.9991414,0.00003972479,0.0002690311,0.0001749454,0.0002015037,0.0001733905],"domain_scores_gemma":[0.9996403,0.00003561865,0.00005811089,0.0001588879,0.00003653691,0.0000704804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005077929,0.0003551519,0.9859207,0.0001103306,0.00005759986,0.0001439299,0.002643259,0.00003849397,0.001452288,0.00008832457,0.003248047,0.005434056],"study_design_scores_gemma":[0.003452868,0.00008806546,0.9661112,0.0003160699,0.00004350105,0.000007264157,0.00002408848,0.000115577,0.005640543,0.00002438893,0.02404042,0.0001359393],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900253,0.0004640265,0.001768612,0.0004335698,0.00004953478,0.0002751645,0.000001460643,0.00004276831,0.00693961],"genre_scores_gemma":[0.9144374,0.0005702506,0.002870463,0.00004810258,0.00002891852,0.00001659797,0.00004120157,0.00001431751,0.08197277],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07558788,"threshold_uncertainty_score":0.3909928,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0100116389240154,"score_gpt":0.2285991389958925,"score_spread":0.2185875000718771,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}